Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq990 100 2e-16 seq212 91.5 1e-13 seq8345 86.0 5e-12 seq1245 84.2 2e-11 seq846 84.2 2e-11 >seq990 Length=138715 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | || ||||| ||||| ||| | ||| |||| || Sbjct 23314 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACCTTAGAAGTGGAGTCTTCG 23255 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || |||||| ||||| || ||| | || ||| || Sbjct 23254 GACACCATTGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 23195 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || |||| ||| ||||| ||||||||||||| | | || ||||||| |||||| Sbjct 23194 CAGCGTCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 23135 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || |||||||| | ||| ||||| Sbjct 23134 ATTCAGAAGGAATCTACCCTCCACTTGGTG 23105 >seq212 Length=258318 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | || ||||| ||||| ||| | || |||| || Sbjct 16902 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACCTTAGAGGTGGAGTCTTCG 16843 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || |||||| ||||| || ||| | || ||| || Sbjct 16842 GACACCATTGATAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAG 16783 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || |||| ||| ||||| ||||||||||||| | | || ||||||| |||||| Sbjct 16782 CAGCGTCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 16723 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||| || | ||| ||||| Sbjct 16722 ATTCAGAAGGAATCCACCCTCCACTTGGTG 16693 >seq8345 Length=7904 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | |||||||| ||||| ||| | || |||| || Sbjct 7715 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 7656 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||| ||||| || ||| | || ||| || Sbjct 7655 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 7596 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || || ||||| ||||||| | ||| | || ||||||||| Sbjct 7595 CAGAGGCTTATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACACTTGCTGATTACAAC 7536 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || ||||| | ||| ||||| Sbjct 7535 ATACAGAAGGAGTCTACCCTCCACCTGGTG 7506 >seq1245 Length=124263 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || ||| | ||| || || ||||| || |||| ||| ||||| || |||| Sbjct 66978 GACAAGGAGGGCATTCCCCCAGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 66919 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| | || ||||| |||||||||||||| || || | ||| |||| | Sbjct 66918 GATGGAAGAACATTAGCTGATTATAACATTCAAAAAGAGTCGACACTTCACTTGGTCCTG 66859 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 66858 AGGCTCAGAGGTGGAA 66843 >seq846 Length=151982 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || ||| | ||| || || ||||| || |||| ||| ||||| || |||| Sbjct 29491 GACAAGGAGGGCATTCCCCCAGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 29432 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| | || ||||| |||||||||||||| || || | ||| |||| | Sbjct 29431 GATGGAAGAACATTAGCTGATTATAACATTCAAAAAGAGTCGACACTTCACTTGGTCCTG 29372 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 29371 AGGCTCAGAGGTGGAA 29356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412773126221237