Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq990 95.1 1e-14 seq212 86.0 5e-12 seq463 84.2 2e-11 seq8345 82.4 6e-11 >seq990 Length=138715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| | ||| |||| || Sbjct 23314 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACCTTAGAAGTGGAGTCTTCG 23255 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| || || || ||| | || ||| ||| Sbjct 23254 GACACCATTGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 23195 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||| ||||| ||||||||||| | | || |||||||||||||| Sbjct 23194 CAGCGTCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 23135 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||| ||||| | ||| ||||| Sbjct 23134 ATTCAGAAGGAATCTACCCTCCACTTGGTG 23105 >seq212 Length=258318 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| | || |||| || Sbjct 16902 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACCTTAGAGGTGGAGTCTTCG 16843 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| || || || ||| | || ||| ||| Sbjct 16842 GACACCATTGATAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAG 16783 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||| ||||| ||||||||||| | | || |||||||||||||| Sbjct 16782 CAGCGTCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 16723 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||| || || | ||| ||||| Sbjct 16722 ATTCAGAAGGAATCCACCCTCCACTTGGTG 16693 >seq463 Length=196461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||||||||| || || | || ||||| || || || | || || ||| Sbjct 42541 AATGCAAATTTTTGTAAAGACCCTTACTGGCAAGACAATCACGTTGGAGGTTGAAAGCTC 42600 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || | | | | || || |||||| || || || ||| | ||| || | Sbjct 42601 -CGACACAATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACC 42659 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || || ||||| ||||| | | ||| |||||||||||| Sbjct 42660 AGCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACACTGGCGGACTACA 42719 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||| || ||||||||||| | ||| | ||| || Sbjct 42720 ACATCCAGAAGGAGTCTACTCTCCACCTTGTGCTG 42754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || | |||||||| || || || | || ||| ||| Sbjct 42770 ATGCAGATATTTGTGAAGACCCTTACAGGCAAGACAATAACATTGGAGGTTGAGAGCTCT 42829 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || ||||||| || ||||| ||| | ||| ||| || Sbjct 42830 -GACACTATTGACAATGTCAAGGCAAAGATTCAGGACAAAGAGGGCATCCCCCCGGACCA 42888 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| || |||| | ||| |||| |||||||| Sbjct 42889 GCAGAGGCTCATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGCACACTGGCAGACTACAA 42948 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||||||||| Sbjct 42949 CATCCAGAAGGAGTCTAC 42966 >seq8345 Length=7904 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| | || |||| || Sbjct 7715 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 7656 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | || ||| ||| Sbjct 7655 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 7596 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| || || ||||| ||||| | ||| | || || |||||| Sbjct 7595 CAGAGGCTTATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACACTTGCTGATTACAAC 7536 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 7535 ATACAGAAGGAGTCTACCCTCCACCTGGTG 7506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398810642418601