Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq463 111 1e-19 seq2370 109 4e-19 seq212 109 4e-19 seq990 104 2e-17 seq8279 91.5 1e-13 seq1245 91.5 1e-13 seq846 91.5 1e-13 seq1412 82.4 6e-11 >seq463 Length=196461 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| || || | ||||| || || || || || ||||| || || || Sbjct 42996 CCACCCCTAAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 42937 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || || ||||| | || | || ||||| ||||| || Sbjct 42936 AGTGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 42877 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || ||| |||| |||||| | || | ||||||||| || || Sbjct 42876 ATGCCCTCTTTGTCCTG-AATCTTTGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAAC 42818 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||||| || ||||| || | ||| || |||||||||||||| Sbjct 42817 CTCCAATGTTATTGTCTTGCCTGTAAGGGTCTTCACAAATATCTGCAT 42770 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||||| || || || | || || || || || || || ||||| ||||| || Sbjct 42541 TCCACCCCTCAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 42482 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || || || || |||||| | || | || ||||| ||||| || Sbjct 42481 CAATGTACGGCCATCTTCTAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCCGGGGG 42422 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||||| || || || ||| || | || ||| | | | ||||| || || | Sbjct 42421 GATACCCTCCTTATCCTG-AATCTTGGCCTTAACATTGTTGATCGTGTCCGAGCTCTCAA 42363 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || || |||||||| | || || || ||||||||||| Sbjct 42362 CCTCGAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACGAATATCTGCAT 42314 >seq2370 Length=76838 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| || || ||||| || || ||||||||||| || |||| ||||| | Sbjct 12788 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCTGCAAGAGTGCGGCCA 12729 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | |||| || ||||| || || || || ||||| ||| Sbjct 12728 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 12669 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||| || || || ||||| || || Sbjct 12668 TCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATG 12609 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| ||||| || |||||||| Sbjct 12608 GTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 12574 >seq212 Length=258318 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || ||||| || || || ||||| || || |||| |||||| | Sbjct 16916 CGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCA 16975 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||||||||| | || | | ||||| || || ||||||||||| ||| Sbjct 16976 TCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCCTCCTTG 17035 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||| || || || ||||| || || Sbjct 17036 TCCTGGATCTTAGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGCGTAATG 17095 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || ||||| |||||||| Sbjct 17096 GTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 17130 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | | |||||||| || || || || || || || ||||| || || ||| Sbjct 17360 CCACCCCTGAGCCTCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 17419 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || ||||| ||||||||| | || | | ||||||||||| || Sbjct 17420 AGGGTGCGGCCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCCGGGGGG 17479 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | ||||| || || || Sbjct 17480 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACC 17539 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || | ||| || || || |||||||| Sbjct 17540 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 17586 >seq990 Length=138715 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || ||||| || || || ||||| || || |||| |||||| | Sbjct 23328 CGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCA 23387 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | || | | ||||| || || ||||||||||| ||| Sbjct 23388 TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCCTCCTTG 23447 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||| || || || ||||| || || Sbjct 23448 TCCTGGATCTTAGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGCGTGATG 23507 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || ||||| |||||||| Sbjct 23508 GTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 23542 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | | |||||||| || || || || || || || ||||| || || ||| Sbjct 23772 CCACCCCTGAGCCTCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 23831 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || ||||| ||||||||| | || | | ||||||||||| || Sbjct 23832 AGGGTGCGGCCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCCGGGGGG 23891 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | ||||| || || || Sbjct 23892 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACC 23951 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || | ||| || || || |||||||| Sbjct 23952 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 23998 >seq8279 Length=8219 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||||| || || || | || || || || || || || ||||| ||||| || Sbjct 6310 TCCACCCCTCAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 6251 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || || || || |||||| | || | || ||||| ||||| || Sbjct 6250 CAATGTACGGCCATCTTCTAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCCGGGGG 6191 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||||| || || || ||| || | || ||| | || | ||| | || || | Sbjct 6190 GATACCCTCCTTATCCTG-AATCTTGGCCTTAACATTGTCGATCGTGCCCGAGCTCTCAA 6132 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || || |||||||| | || || || ||||||||||| Sbjct 6131 CCTCGAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACGAATATCTGCAT 6083 >seq1245 Length=124263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| ||||| ||||| || || |||||||||||||||||||| || | || | ||| Sbjct 66859 CAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTTCCATC 66918 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | ||| || |||||| | |||| |||||||| || || ||||| ||||| ||||| Sbjct 66919 TTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 66978 Query 29694 TTG 29696 || Sbjct 66979 CTG 66981 >seq846 Length=151982 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| ||||| ||||| || || |||||||||||||||||||| || | || | ||| Sbjct 29372 CAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTTCCATC 29431 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | ||| || |||||| | |||| |||||||| || || ||||| ||||| ||||| Sbjct 29432 TTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 29491 Query 29694 TTG 29696 || Sbjct 29492 CTG 29494 >seq1412 Length=113785 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || || || || || |||||||| || || || | ||||| ||| Sbjct 74985 AGTACCAAGTGTAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCCAGCGTGCGTCCATCC 75044 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || ||||||||| ||||||| | ||||||||||| ||||| || || || || Sbjct 75045 TCCAGCTGCTTGCCAGCAAATATCAAACGCTGCTGATCCGGAGGAATCCCTTCCTTATCC 75104 Query 29695 TGT 29697 ||| Sbjct 75105 TGT 75107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385155307663869