Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq691 271 8e-68 seq7208 259 5e-64 seq2365 235 6e-57 seq160 131 2e-25 >seq691 Length=167025 Score = 271 bits (300), Expect = 8e-68 Identities = 354/486 (73%), Gaps = 3/486 (1%) Strand=Plus/Minus Query 157144 TTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTT 157203 || ||| | || ||| | ||||| | ||| | ||||| || ||||||||| | || || Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 157204 GCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAAC 157263 ||||||| | | ||||| ||||| || |||||||||| || |||| ||| Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 157264 GCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTAC 157323 || ||||| | || || ||||| || |||||||| ||||| |||||||| ||| | ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 157324 AACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCG-GCATCTATGCCTATAT 157382 || |||||||||| | || | || | || ||| | | | | | || || ||||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TGT-TATAT 130946 Query 157383 GGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTA 157442 ||| ||||||||||||||| || | || | ||||||| || ||||| |||||| || Sbjct 130945 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 130886 Query 157443 CTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTC 157502 || || || || || ||||| | ||| || ||| | | || || |||||||||| Sbjct 130885 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAG 130826 Query 157503 TTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCA 157562 |||||| |||| |||| || | || |||||||||||||| |||| |||| | || ||| | Sbjct 130825 TTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 130766 Query 157563 GGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGG 157622 || ||||||||| || ||||||||||| || |||||| | || || ||||| ||| || Sbjct 130765 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTGG 130706 Query 157623 TGGATC 157628 || ||| Sbjct 130705 TGCATC 130700 >seq7208 Length=13341 Score = 259 bits (286), Expect = 5e-64 Identities = 420/598 (70%), Gaps = 5/598 (1%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| | | | ||||| ||||| || || | || | | ||||| ||||| | Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || || | | ||||| |||| || ||| | || ||| | ||||| || Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAA-CA 157228 ||| || ||||| || ||||||| || || ||| ||||||| | || ||| | || || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 157229 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCA 157288 | || ||||||||||| || |||||| ||| || ||| | | || || ||||| Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 157289 TCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAG 157348 | || ||||| |||| ||||||| ||| | ||||| |||||||||| | || | | Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 157349 TCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACC 157408 | | |||||| | | || | | |||||||| ||||| ||||||||| || Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 157409 GTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTG 157468 |||| |||| ||| || ||||| |||| |||| || | || || || ||||| | | Sbjct 2035 GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAG 2094 Query 157469 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 157528 | | ||| | |||| ||| |||||||| ||| || ||| |||| || | || | Sbjct 2095 CTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAA 2154 Query 157529 TCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATC 157588 ||||||||||||| |||| |||| || ||||||||| ||||||| || |||| ||||| Sbjct 2155 TCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATC 2214 Query 157589 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCA 157646 | || ||||| | || || ||||| |||||||| || || | ||| ||||||||| Sbjct 2215 CATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCA 2271 >seq2365 Length=77851 Score = 235 bits (260), Expect = 6e-57 Identities = 333/468 (71%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 157144 TTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTT 157203 || ||| | || ||| | ||||| ||| | ||||| || ||||||| ||| || || Sbjct 13430 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 157204 GCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAAC 157263 ||||||| | | ||||| ||||| || ||||||||||| || |||| ||| Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 13540 Query 157264 GCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTAC 157323 | || | || || ||||| || |||||| ||||| |||||||| ||| | ||| Sbjct 13541 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 157324 AACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATG 157383 || |||||||||| | || | || | |||||| | | || | | |||||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 157384 GGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTAC 157443 || ||||||||||||||| || | || | ||||||| || ||||| |||||| | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 157444 TCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 157503 || || || || | ||||| | ||| || ||| | | || ||| | |||||||| | Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 157504 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAG 157563 ||||| |||| ||||||| | || |||||||||||||| |||| |||| | || ||| || Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 157564 GCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 157611 | ||||||||| || ||||||||||| || |||||| | || || ||| Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 131 bits (144), Expect = 2e-25 Identities = 157/213 (74%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 157757 ACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTC 157816 ||||||| || ||||| | ||||||||||| ||| ||||||||| | | | | Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 157817 ACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCA 157876 ||||||| || || |||||||| || || |||||||||||||| | || | || | Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 157877 CCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 157936 | |||||||||||||| || |||||||| |||||||| || | ||||| | || |||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 255305 Query 157937 GTGTGTTGAACACCTGGGCAGATGTCCTGAACC 157969 | || | || || ||||| ||| || | |||| Sbjct 255306 GCGTTATTAATACTTGGGCTGATATCATCAACC 255338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545180842144720