Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq691 232 8e-56 seq7208 228 1e-54 seq2365 212 8e-50 seq160 131 2e-25 seq4676 91.5 2e-13 seq3029 91.5 2e-13 seq2604 87.8 2e-12 >seq691 Length=167025 Score = 232 bits (256), Expect = 8e-56 Identities = 359/505 (71%), Gaps = 6/505 (1%) Strand=Plus/Minus Query 177633 TTGGCAGCAACTATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGAC 177692 ||| | |||||| || || || |||||||| | || || | || | || || || Sbjct 131200 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 131142 Query 177693 GGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCA 177752 || || || | || | |||||| | | ||||| ||||| || |||||||||| Sbjct 131141 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 131082 Query 177753 GTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCA 177812 || | ||| ||| || || || | || || || || || |||||||| ||||| Sbjct 131081 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 131022 Query 177813 CTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATC 177872 |||||||| ||| | || || |||||||||| | || | || | || ||| | | Sbjct 131021 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTT 130962 Query 177873 G-GCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCC 177931 | | | || || |||||||| ||||||||||||||| | | |||| ||||||| || Sbjct 130961 GTGTAGCT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCC 130904 Query 177932 CTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCT 177990 ||||| ||||||||| || || ||||||||||| || | || || ||||| | | | Sbjct 130903 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTT 130845 Query 177991 ATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTA 178050 | || |||||||||| ||||| |||| |||| || | || |||||||||||||| | Sbjct 130844 ACGCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCA 130785 Query 178051 ACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCG 178110 ||| ||| |||||||| | | ||| ||||| ||||||||||| || || |||||| | | Sbjct 130784 ACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAG 130725 Query 178111 GTGTTGCTGGGGTATTCGGTGGATC 178135 |||| ||||| ||| |||| ||| Sbjct 130724 GTGTAGCTGGTGTAGCTGGTGCATC 130700 >seq7208 Length=13341 Score = 228 bits (252), Expect = 1e-54 Identities = 414/599 (69%), Gaps = 5/599 (1%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||| | | | ||||| ||||| || | || || || | ||||| || || || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | ||||| |||| || || |||||||| |||| ||||| Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAA-CA 177735 || || || || || || || | ||| || || |||||| | || ||| | || || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 177736 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 177795 | || ||||||||||| || | || | ||| || || | | || || || || Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 177796 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 177855 | || ||||| |||| ||||||| ||| | || || |||||||||| | || | | Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 177856 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACC 177915 | | |||||| | | || | | |||||||| ||||| ||||||||| | Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 177916 GTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCG 177975 || | |||| ||| || ||||| |||| | || || | ||||||||||| || | | Sbjct 2035 GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAG 2094 Query 177976 CAGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 | | || || |||| ||| |||||||| || || ||| |||| || | || | Sbjct 2095 CTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAA 2154 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 ||||||||||||| |||| ||| ||||||||| ||| | ||||| ||||||| ||| | Sbjct 2155 TCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATC 2214 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 178154 | || ||||| | ||||| ||||| |||||||| || || || ||| |||||||||| Sbjct 2215 CATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCAT 2272 >seq2365 Length=77851 Score = 212 bits (234), Expect = 8e-50 Identities = 326/462 (71%), Gaps = 16/462 (3%) Strand=Plus/Plus Query 177658 TCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTT 177717 |||||||| |||| ||| || | || || || || || | || || | ||||| Sbjct 13437 TCGCCTTCATCGCAGCTTCCAA--TAGATATTGATGGTATTCACGAGCCTATTTTTGGTT 13494 Query 177718 CACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTG 177777 | | | ||||| ||||| || ||||||||||| || | |||||| | |||| Sbjct 13495 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTT-------TCCAACTCGATTG 13547 Query 177778 GTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTG 177837 || || || || || |||||| ||||| |||||||| ||| | || || |||| Sbjct 13548 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 13602 Query 177838 GTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTG 177897 |||||| | || | || | |||||| | | || | | |||||||| |||| Sbjct 13603 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 13662 Query 177898 AGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCAC 177957 ||||||||||| | | |||| ||||||| || ||||| ||||||| | || || | Sbjct 13663 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 13722 Query 177958 CTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCC 178016 ||||| |||| || | || || ||||| | | || ||| | |||||||| ||||| Sbjct 13723 CTGTTTCAGCTGCTACTGCTGT-TTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 13781 Query 178017 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 178076 |||| ||||||| | || |||||||||||||| |||| ||| |||||||| | | ||| Sbjct 13782 GATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAG 13841 Query 178077 CACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCT 178118 ||||| ||||||||||| || || |||||| | ||||| ||| Sbjct 13842 CACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 131 bits (144), Expect = 2e-25 Identities = 156/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 178266 GGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCAC 178325 ||||| || ||||| || |||||||||||||| ||||||||||| ||||| | ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 178326 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACC 178385 ||||| || || ||||||||||| || ||||||||||| || | ||| | || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 178386 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGT 178445 |||||||| ||||| ||||| ||||| |||||||| || | | || | ||||| || Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 178446 GTCCTCAACACATGGGCAGACGTGCTCAACC 178476 || | || || ||||| || | |||||| Sbjct 255308 GTTATTAATACTTGGGCTGATATCATCAACC 255338 >seq4676 Length=34330 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||||||| ||||||| || ||| | || | || ||||| || |||||||| Sbjct 23785 TACATCCTTGATTCTGCTGAGGATAATGGTGTGGAGTTGCCATACTCATGCCGTGCTGGG 23726 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 || || || ||||| ||||| ||| | | | || ||||||||||| ||| || Sbjct 23725 GCTTGCTCCACCTGCGCTGGCAAAATTGAGGCTGGCGAGGTAGATCAGTCCGACGGATCC 23666 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||| || || | ||| | | | |||| || || | ||||||| Sbjct 23665 TTCCTGGATGATGGGCAGCAGGCTGAAGGCTATGTGCTGACATGTGTCTCGTACCCCAAG 23606 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACT 138760 ||||| ||| | || | ||| | || || | ||| || |||| Sbjct 23605 TCCGACTGTGTCATACACACTCACAAGGAAGGCGATCTGTACT 23563 >seq3029 Length=59998 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||||||||||||||| || ||| | || | || ||||| || |||||||| Sbjct 37151 TACATCCTTGATGCTGCTGAGGATAATGGTGTGGAGTTGCCATACTCATGCCGTGCTGGG 37210 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 || || || ||||| ||||| ||| | | | || |||||||||| ||| || Sbjct 37211 GCTTGCTCCACCTGCGCTGGCAAAATTGAGGTTGGCGAGTTAGATCAGTCCGACGGATCC 37270 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||| || || | ||| | | | |||| || || | ||||||| Sbjct 37271 TTCCTGGATGATGGGCAGCAGGCTGAAGGCTATGTGCTGACATGTGTCTCGTACCCCAAG 37330 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACT 138760 ||||| ||| | || | ||| | || || | ||| || |||| Sbjct 37331 TCCGACTGTGTCATACACACTCACAAGGAAGGCGATCTGTACT 37373 >seq2604 Length=68694 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||||||||||||||| || || | || | || ||||| || |||||||| Sbjct 25039 TACATCCTTGATGCTGCTGAGGATAATGGCGTGGAGTTGCCATACTCATGCCGTGCTGGG 25098 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 || ||||| || |||||||| ||| | | | || ||||||||||| || || Sbjct 25099 GCTTGTTCCACATGTGCTGGCAAAATTGAGGTTGGCGAGGTAGATCAGTCAGATGGATCC 25158 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 || |||||||||| || || | ||| | | | ||||||| || ||||||| | Sbjct 25159 TTTCTTGATGATGGGCAGCAGGCTGAAGGCTATGTGCTGACTTGTGTGTCATACCCTAAG 25218 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACT 138760 || || ||| | || | || | ||||| | || || |||| Sbjct 25219 TCGGACTGTGTCATCCACACACACAAAGAAGGTGACCTGTACT 25261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605564168438440