Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq797 111 1e-18 seq253 111 1e-18 seq6151 107 1e-17 seq186 107 1e-17 seq48 107 1e-17 seq317 105 5e-17 seq217 104 2e-16 seq2076 102 6e-16 seq1770 100 2e-15 seq1396 100 2e-15 seq6491 98.7 7e-15 seq869 96.9 3e-14 seq2779 91.5 1e-12 seq1522 91.5 1e-12 seq1330 91.5 1e-12 seq496 91.5 1e-12 >seq797 Length=160493 Score = 111 bits (122), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| ||||| |||| |||||| | || | | |||| || | || | Sbjct 15499 ACATCAAAGGTACCACCTCCCAAATCAAACACTAGGA---TTGTTTCATTATTTT---TC 15446 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| ||||| || || | |||||||||||||| || ||||| | | ||| | Sbjct 15445 TTCTCAAAGCCATAAGCCAATGATGCAGCAGTTGGTTCGTTTATAATACGAAGAACCTCC 15386 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || ||||| | || |||||||| || ||| |||||||||||| || |||||||| Sbjct 15385 AGTCCTGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGTGAATCATTGAAATATGCT 15326 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 ||||| |||| ||| || | ||| Sbjct 15325 GGAACTGTAACAACTGCTTTTGT 15303 >seq253 Length=256332 Score = 111 bits (122), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| ||||| |||| |||||| | || | | |||| || | || | Sbjct 138910 ACATCAAAGGTACCACCTCCCAAATCAAACACTAGGA---TTGTTTCATTATTTT---TC 138963 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| ||||| || || | |||||||||||||| || ||||| | | ||| | Sbjct 138964 TTCTCAAAGCCATAAGCCAATGATGCAGCAGTTGGTTCGTTTATAATACGAAGAACCTCC 139023 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || ||||| | || |||||||| || ||| |||||||||||| || |||||||| Sbjct 139024 AGTCCTGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGTGAATCATTGAAATATGCT 139083 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 ||||| |||| ||| || | ||| Sbjct 139084 GGAACTGTAACAACTGCTTTTGT 139106 >seq6151 Length=20119 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| |||| ||||||||||||||| ||||| || || | | ||| Sbjct 13587 TTCTTGTCGAGACCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATACGGAGCACA 13528 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| ||| ||||| || ||||| || || || || || || || || Sbjct 13527 TTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGCGAGTCATTGAAGTAG 13468 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 |||||||| || | ||| |||| Sbjct 13467 GCAGGAACTGTGACAACAGCAT 13446 >seq186 Length=278655 Score = 107 bits (118), Expect = 1e-17 Identities = 138/189 (73%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 |||||| ||| || || |||| |||||||| || | | | ||| || | || | Sbjct 150501 AACATCGAAGGTACCGCCTCCCAAATCAAAAACTAGGATAGT---TTCATTATTTT---T 150554 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 || |||| |||||| || | | ||||||||||||||||| ||||| | | ||| | Sbjct 150555 CTTCTCAAAACCATAGGCCAGTGATGCAGCAGTTGGTTCATTTATAATACGGAGAACCTC 150614 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||| || ||||| | || |||||||| || ||| |||||| |||||||| |||||||| Sbjct 150615 AAGTCCCGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGCGAATCGTTGAAATATGC 150674 Query 282454 AGGAACAGT 282462 ||||| || Sbjct 150675 TGGAACTGT 150683 >seq48 Length=407032 Score = 107 bits (118), Expect = 1e-17 Identities = 138/189 (73%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 |||||| ||| || || |||| |||||||| || | | | ||| || | || | Sbjct 301275 AACATCGAAGGTACCGCCTCCCAAATCAAAAACTAGGATAGT---TTCATTATTTT---T 301328 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 || |||| |||||| || | | ||||||||||||||||| ||||| | | ||| | Sbjct 301329 CTTCTCAAAACCATAGGCCAGTGATGCAGCAGTTGGTTCATTTATAATACGGAGAACCTC 301388 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||| || ||||| | || |||||||| || ||| |||||| |||||||| |||||||| Sbjct 301389 AAGTCCCGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGCGAATCGTTGAAATATGC 301448 Query 282454 AGGAACAGT 282462 ||||| || Sbjct 301449 TGGAACTGT 301457 >seq317 Length=225498 Score = 105 bits (116), Expect = 5e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || ||||||||||||||||| || |||| ||||||||| Sbjct 213671 CCATAAGACAGAGCAGCTGCCGTTGGTTCATTAATAATCCTTTCCACATCGAGACCAGCA 213730 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | ||||||||||| ||||| || | || | ||| || |||||||| ||||||||| Sbjct 213731 ATGCGGCCTGCATCTTTTGTGGCCTGACGCTGCGCATCATTGAAATATGCTGGAACAGTA 213790 Query 282464 ATAACGGC 282471 || || || Sbjct 213791 ATCACAGC 213798 >seq217 Length=261035 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||||||||| |||| |||||||||||| || ||||| || || | | ||| Sbjct 170730 TTCTTGTCAAGACCATAGGCAATAGCAGCAGCAGTGGGCTCATTGATGATACGGAGGACA 170671 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| || ||||| || ||||| || || || || || || || || Sbjct 170670 TTCAGACCAGCAATCACACCCGCATCCTTGGTGGCCTGCCTCTGAGAGTCATTGAAGTAG 170611 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 |||||||| || | ||| |||| Sbjct 170610 GCAGGAACTGTGACAACAGCAT 170589 >seq2076 Length=85219 Score = 102 bits (112), Expect = 6e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || ||||||||||| || ||||| ||||| || |||||| Sbjct 69486 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATTCTTTCAACATCGAGGCCAGCA 69427 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | |||||||| || |||||||| | |||| ||| || ||||| || ||||||||| Sbjct 69426 ATCCGACCTGCATCCTTTGTGGCTTGACGCTGTGCATCATTGAAATAAGCTGGAACAGTA 69367 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 || || || | || || ||| |||| |||| Sbjct 69366 ATCACAGCCTTTGAAACAGATTTGCCAAGGTAAG 69333 >seq1770 Length=95507 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || ||||||||||||||||| || |||| ||||||||| Sbjct 83009 CCATAAGACAGAGCAGCTGCCGTTGGTTCATTAATAATCCTTTCCACATCGAGACCAGCA 83068 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | ||||||||||| ||||| || | || | ||| || ||||| || ||||||||| Sbjct 83069 ATGCGGCCTGCATCTTTTGTGGCCTGACGCTGCGCATCATTGAAATAAGCTGGAACAGTA 83128 Query 282464 ATAACGGC 282471 || || || Sbjct 83129 ATCACAGC 83136 >seq1396 Length=117433 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||||||||| |||| |||||||||||| || ||||| || || | | ||| Sbjct 111536 TTCTTGTCAAGACCATAGGCAATAGCAGCAGCAGTGGGCTCATTGATGATACGGAGGACA 111595 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| || ||||| || ||||| || || || || || || || || Sbjct 111596 TTCAGACCAGCAATCACACCCGCATCCTTGGTGGCCTGCCTCTGAGAGTCATTGAAGTAG 111655 Query 282452 GCAGGAACAGTAATAACGGC 282471 |||||||| || | ||| || Sbjct 111656 GCAGGAACTGTGACAACAGC 111675 >seq6491 Length=17682 Score = 98.7 bits (108), Expect = 7e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || ||||||||||| || ||||| ||||| || |||||| Sbjct 17559 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATTCTTTCAACATCGAGGCCAGCA 17618 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | |||||||| || |||||||| | |||| ||| || ||||| || ||||||||| Sbjct 17619 ATCCGACCTGCATCCTTTGTGGCTTGACGCTGTGCATCATTGAAATAAGCTGGAACAGTA 17678 Query 282464 AT 282465 || Sbjct 17679 AT 17680 >seq869 Length=147283 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||| |||||||| || ||||| ||||| |||| || | ||| |||||| Sbjct 34244 CCATAGGACAGAGCTGCAGCAGTGGGCTCATTGATAATCCTCATCACCTCAAGCCCAGCA 34303 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||||| || ||||| || || || || | || | ||| || ||||| ||||| |||||| Sbjct 34304 ATTCTACCAGCATCCTTTGTAGCCTGACGCTGAGCATCATTGAAATAAGCAGGGACAGTA 34363 Query 282464 ATAACGGC 282471 ||||| || Sbjct 34364 ATAACAGC 34371 >seq2779 Length=65479 Score = 91.5 bits (100), Expect = 1e-12 Identities = 298/460 (65%), Gaps = 10/460 (2%) Strand=Plus/Minus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 || || || ||||||| || || | ||||| || || |||| | || || |||| Sbjct 18710 TCGATGCCCTCGAACAGGGAGTCGATCTCAATGGTTGTCTGAGCAGTTGACGACAGTGTG 18651 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137 || || ||||| ||||| || || | || || || | || || | ||| | | | Sbjct 18650 CGCTTGGCACGCTCACAGGCAGTGCGCAGCCTGCGAAGAGCGCGTG--GGTTGCCACTGA 18593 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 ||| | || | || | |||||| |||| ||| | | || ||||| || || | Sbjct 18592 TATCCTTCTTGTGCTTGCGCTTGAATTCTTGAACGAAGTGGTTCACCAGACGGTTGTCGA 18533 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || |||||||| | | ||| | || | || || | || | ||| | || || | Sbjct 18532 AGTCCTCACCTCCAAGGTGAGTGTCACCAGCAGTGGCCTTCACCTCGAAGATGCCCTCCT 18473 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | || | ||||| || |||||||| | ||||| || || || ||| Sbjct 18472 CAATGGTGAGCAGCGACACATCGAACGTGCCACCACCAAGGTCAAAGATGAGCACGTTCT 18413 Query 282318 TTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | || | ||| || || ||||||||||| |||| || ||||| || || | Sbjct 18412 TCTCACCCGCGCTGCTGGCCTTCTTGTCAAGACCATAGGCAATGGCGGCAGCCGTGGGCT 18353 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 | || || || | ||| ||||| || |||||||| || ||||| || ||||| || | Sbjct 18352 CGTTGATGATGCGCAACACATTGAGGCCAGCAATGACACCGGCATCCTTGGTGGCCTGCC 18293 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 | || || || ||||| || || || || || | ||||| Sbjct 18292 TCTGCGAGTCATTAAAGTAGGCCGGCACTGTCACTACGGC 18253 >seq1522 Length=105804 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||||||||| |||| ||||||||||| |||||||| || || | || ||| Sbjct 48408 TTCTTGTCAAGACCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATTATACGCATCACA 48467 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| || || || || ||||| || || || || ||||| || || Sbjct 48468 TTGAGGCCGGCAATGACACCAGCGTCCTTGGTGGCCTGCCTCTGCGAGTCGTTGAAGTAG 48527 Query 282452 GCAGGAACAGTAATAACGGC 282471 ||||| || || | ||||| Sbjct 48528 GCAGGCACTGTTACCACGGC 48547 >seq1330 Length=116745 Score = 91.5 bits (100), Expect = 1e-12 Identities = 298/460 (65%), Gaps = 10/460 (2%) Strand=Plus/Plus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 || || || ||||||| || || | ||||| || || |||| | || || |||| Sbjct 98450 TCGATGCCCTCGAACAGGGAGTCGATCTCAATGGTTGTCTGAGCAGTTGACGACAGTGTG 98509 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137 || || ||||| ||||| || || | || || || | || || | ||| | | | Sbjct 98510 CGCTTGGCACGCTCACAGGCAGTGCGCAGCCTGCGAAGAGCGCGTG--GGTTGCCACTGA 98567 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 || | || | || | |||||| |||| ||| | | || ||||| || || | Sbjct 98568 TGTCCTTCTTGTGCTTGCGCTTGAATTCTTGAACGAAGTGGTTCACCAGACGGTTGTCGA 98627 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || |||||||| | | ||| | || | || || | || | ||| | || || | Sbjct 98628 AGTCCTCACCTCCAAGGTGAGTGTCACCAGCAGTGGCCTTCACCTCGAAGATGCCCTCCT 98687 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | || | ||||| || |||||||| | ||||| || || || ||| Sbjct 98688 CAATGGTGAGCAGCGACACATCGAACGTGCCACCACCAAGGTCAAAGATGAGCACGTTCT 98747 Query 282318 TTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | || | ||| || || ||||||||||| |||| || ||||| || || | Sbjct 98748 TCTCACCCGCGCTGCTGGCCTTCTTGTCAAGACCATAGGCAATGGCGGCAGCCGTGGGCT 98807 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 | || || || | ||| ||||| || |||||||| || ||||| || ||||| || | Sbjct 98808 CGTTGATGATGCGCAACACATTGAGGCCAGCAATGACACCGGCATCCTTGGTGGCCTGCC 98867 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 | || || || ||||| || || || || || | |||||| Sbjct 98868 TCTGCGAGTCATTAAAGTAGGCCGGCACTGTCACAACGGC 98907 >seq496 Length=190310 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||| || ||||| || ||||| ||||| |||| || | ||| |||||| Sbjct 93223 CCATAGGACAGAGCTGCGGCAGTGGGCTCATTGATAATCCTCATCACCTCAAGCCCAGCA 93282 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||||| || ||||| || || || || | || | ||| || ||||| ||||| |||||| Sbjct 93283 ATTCTACCAGCATCCTTTGTAGCCTGACGCTGAGCATCATTGAAATAAGCAGGGACAGTA 93342 Query 282464 ATAACGGC 282471 ||||| || Sbjct 93343 ATAACAGC 93350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739962255611634