Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq691 232 2e-56 seq7208 208 2e-49 seq2365 199 1e-46 seq160 150 5e-32 >seq691 Length=167025 Score = 232 bits (256), Expect = 2e-56 Identities = 341/476 (72%), Gaps = 5/476 (1%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||||| || |||||||| || | ||| | || |||||||| || ||| | || | Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 19717 | ||| | |||||||||||||| || || || || | | | |||| | | Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 19718 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTAC 19777 || |||||| | || || |||||||||||||||||| || |||||||||||| | ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 19778 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG-GCATCTATGCTTACAT 19836 || || || || | | || | || | || ||| | ||| | | || || ||| || Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TG-TTATAT 130946 Query 19837 GGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTA 19896 ||| || ||||||||||||| | | || || ||| ||||||||| |||||| || Sbjct 130945 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 130886 Query 19897 CTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTA 19955 || ||||| |||||||| || |||| || ||||| | | ||| | | ||||| || | Sbjct 130885 TTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTTACGCTATCGGTCAAGGAA 130827 Query 19956 GCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCC 20015 | ||||| |||| |||| |||| || ||||| ||||| ||||||| ||| | |||||| Sbjct 130826 GTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCG 130767 Query 20016 AAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTA 20071 | | || || ||||| || ||||| || || |||||| | ||||| ||||||||| Sbjct 130766 AGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTA 130711 >seq7208 Length=13341 Score = 208 bits (230), Expect = 2e-49 Identities = 429/624 (69%), Gaps = 13/624 (2%) Strand=Plus/Plus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTG-C 19584 ||||| || ||||||| | | |||||||| ||||||| || | || ||| | Sbjct 1698 ACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 1755 Query 19585 AGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCA 19643 || ||| |||| || ||||| || ||||| || ||||| ||||| || |||||||| | Sbjct 1756 TGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTA 1814 Query 19644 TCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAA-CAACATCATATCGGGAGCCGTC 19702 | | || || || | ||| | ||||| |||| ||| || || || || ||| | Sbjct 1815 TTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATT 1874 Query 19703 GTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCAC 19760 |||| | ||| || ||| || | || || |||||| |||| ||||| | Sbjct 1875 ATTCCTTTTTCTGCA--GCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTG 1932 Query 19761 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG 19820 ||||||||||| | ||||| || || || | | || | || | |||||| | ||| Sbjct 1933 TTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTG 1992 Query 19821 GCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTT 19880 | | | ||| ||||| || || ||||||||||| | | | || | | | |||| Sbjct 1993 GTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTT 2052 Query 19881 GGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACC 19940 ||||| |||| |||| || |||| |||||||| || | || | || | |||||| Sbjct 2053 GGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACC 2112 Query 19941 CGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACT 20000 | |||||| || || || || ||| |||| |||| || ||||| ||||| ||||||| Sbjct 2113 CTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACT 2172 Query 20001 ACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTG 20060 ||| |||||||| || | || ||||| || | ||| || || ||||| | |||| Sbjct 2173 TTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTG 2232 Query 20061 TGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCT 20120 | |||||||||||||| || || ||||||| ||| ||||| |||| |||| || || Sbjct 2233 TAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCATAGTTC-CTTGGTAACCTCT 2290 Query 20121 CGCTTG-TGCGTGAGACTACTGAA 20143 | ||| | | ||||| |||||| Sbjct 2291 AGTTTGCTCAGGGAGACCACTGAA 2314 >seq2365 Length=77851 Score = 199 bits (220), Expect = 1e-46 Identities = 329/472 (70%), Gaps = 16/472 (3%) Strand=Plus/Plus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||||| || ||||| || ||| | || | || |||||||| || | ||| || | Sbjct 13430 TTTATTATCGCCTTCATCGCAGCTTC--CAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 19717 | ||| | |||||||||||||| || || || || ||| | |||| | Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAAC------- 13540 Query 19718 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTAC 19777 ||| | | || || ||||||||| ||||||| || |||||||||||| | ||| Sbjct 13541 ----TCG-ATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 19778 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATG 19837 || || || || | | || | || | |||||| | |||| | | ||| ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 19838 GGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTAC 19897 || || ||||||||||||| | | || || ||| ||||||||| |||||| | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 19898 TCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAG 19956 || ||||| ||| |||| || |||| || ||||| | | ||||| ||||||| || || Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGT-TTTCTTGATTTACCCTATTGGTCAAGGAAG 13774 Query 19957 CTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCA 20016 ||||| |||| ||||||||| || ||||| ||||| ||||||| ||| | |||||| | Sbjct 13775 TTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 13834 Query 20017 AGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGT 20068 | || || ||||| || ||||| || || |||||| | ||||| ||| || Sbjct 13835 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 13886 >seq160 Length=286096 Score = 150 bits (166), Expect = 5e-32 Identities = 159/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 20213 GGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACAC 20272 ||||| ||||| || || ||||||||||| ||| ||||||||| |||||| ||||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 20273 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 20332 ||||| ||||||||||| || |||||||| |||||| |||| || || || ||| Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 20333 ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGT 20392 ||||| || || || || |||||||| || ||||| || | | || | | | ||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 20393 GTCATTGATACTTGGGCTGACATTCTCAA 20421 || ||| ||||||||||||| || |||| Sbjct 255308 GTTATTAATACTTGGGCTGATATCATCAA 255336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148804748242722