Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq691 183 9e-42 seq160 154 4e-33 seq7208 150 5e-32 seq2365 149 2e-31 >seq691 Length=167025 Score = 183 bits (202), Expect = 9e-42 Identities = 325/473 (69%), Gaps = 1/473 (0%) Strand=Plus/Minus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| || |||||||| || | ||| | || |||||||| || ||| | ||| | Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAAT 28845 ||| | | || ||||||||||| || || || || | | | | || | | Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 28846 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 28905 || |||||| | || || |||||||||||||||||| || |||||||||||| | ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 28906 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 28965 || || || || | | || | || | || ||| | ||| || | ||| ||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGT-GTAGCTTGTTATATG 130945 Query 28966 GGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATAC 29025 || || ||||||||||||| | | || || ||| || |||||| ||| ||||| Sbjct 130944 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 130885 Query 29026 TCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCT 29085 |||||||| || ||||| || |||| |||||| | | ||| | |||||||||| | Sbjct 130884 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 130825 Query 29086 TTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAA 29145 || || | ||| |||| || || || || || ||||||| ||| | || ||| | Sbjct 130824 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 130765 Query 29146 GCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGT 29198 | || || ||||| || ||||| || || |||||| | || || ||||| || Sbjct 130764 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq160 Length=286096 Score = 154 bits (170), Expect = 4e-33 Identities = 161/211 (76%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 29339 ACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTAC 29398 ||||||| ||||| || || ||||||||||||||| |||||| || |||||| ||| Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 29399 ACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTA 29458 ||||||| ||||||||||| || |||||||| |||||| |||| || || || || Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 29459 CAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTC 29518 | ||||| || || || || ||||| || || ||||| || | | || | | | |||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 255305 Query 29519 GTGTCATTAATACTTGGGCTGATGTTCTCAA 29549 | || |||||||||||||||||| | |||| Sbjct 255306 GCGTTATTAATACTTGGGCTGATATCATCAA 255336 >seq7208 Length=13341 Score = 150 bits (166), Expect = 5e-32 Identities = 416/624 (67%), Gaps = 13/624 (2%) Strand=Plus/Plus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTG-C 28712 ||||| || ||||||| | | |||||||| ||||||| || | || ||| | Sbjct 1698 ACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 1755 Query 28713 AGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCA 28771 || ||| |||| || ||||| || ||||| || || || ||||| || |||||||| | Sbjct 1756 TGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTA 1814 Query 28772 TCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAA-CAACATCATATCGGGAGCCGTC 28830 | | || ||||| ||| | | | ||| |||| ||| || || || || ||| | Sbjct 1815 TTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATT 1874 Query 28831 GTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCAC 28888 | || | ||| || ||| || | || || |||||| |||| ||||| | Sbjct 1875 ATTCCTTTTTCTGCA--GCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTG 1932 Query 28889 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG 28948 ||||||||||| | ||||| || || || | | || | || | |||||| | ||| Sbjct 1933 TTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTG 1992 Query 28949 GCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGT 29008 | || | ||| ||||| || || ||||||||||| | | | || | | | || | Sbjct 1993 GTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTT 2052 Query 29009 GGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACC 29068 ||||| ||| | || ||| |||| || ||||| || | || ||||| | |||||| Sbjct 2053 GGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACC 2112 Query 29069 CATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACT 29128 | |||||||| |||| | | ||| |||| || || || || || ||||||| Sbjct 2113 CTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACT 2172 Query 29129 ACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCG 29188 ||| || ||||| || | || ||||| || | ||| || || ||||| | || | Sbjct 2173 TTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTG 2232 Query 29189 TTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCT 29248 | ||||| || ||||| || || ||||| | ||| ||||| |||| | || || | || Sbjct 2233 TAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCATAGTTCCTTGGTAACCT-CT 2290 Query 29249 CGCTTG-TGCGTGAGACGACTGAA 29271 | ||| | | ||||| |||||| Sbjct 2291 AGTTTGCTCAGGGAGACCACTGAA 2314 >seq2365 Length=77851 Score = 149 bits (164), Expect = 2e-31 Identities = 314/468 (67%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| || ||||| || || | || | || |||||||| || | ||| ||| | Sbjct 13430 TTTATTATCGCCTTCATCGCAGCTTC--CAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAAT 28845 ||| | | || ||||||||||| || || || || ||| | | || | Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAAC------- 13540 Query 28846 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 28905 ||| | | || || ||||||||| ||||||| || |||||||||||| | ||| Sbjct 13541 ----TCG-ATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 28906 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 28965 || || || || | | || | || | |||||| | |||| || | ||| ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 28966 GGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATAC 29025 || || ||||||||||||| | | || || ||| || |||||| ||| ||| | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 29026 TCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCT 29085 |||||||| || |||| || |||| |||||| | | ||||| | |||||||| | Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 29086 TTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAA 29145 || || | |||||||| || || || || || ||||||| ||| | || ||| | Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 29146 GCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCT 29193 | || || ||||| || ||||| || || |||||| | || || ||| Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146641897830714