Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq691 233 5e-57 seq7208 224 3e-54 seq2365 206 8e-49 seq160 118 3e-22 >seq691 Length=167025 Score = 233 bits (258), Expect = 5e-57 Identities = 339/476 (71%), Gaps = 7/476 (1%) Strand=Plus/Minus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| ||||||||||| || | ||| |||| |||||||| || ||| ||||| || Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 18936 || | | |||||||||||||| || || || || | | | |||| | | Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 18937 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 18996 || |||||| | || || |||||||||||||||||| || |||||||||||| | ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 18997 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 19056 || || || || | | || | || | || ||| | ||| || | ||| ||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGT-GTAGCTTGTTATATG 130945 Query 19057 GGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTAC 19116 || || ||||||||||||| | | || || |||| ||||||||| |||||| || Sbjct 130944 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 130885 Query 19117 TCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAG---GT 19173 |||||||||||||| || || |||| || ||| | | || | | ||||||| || Sbjct 130884 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 130825 Query 19174 TCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTC 19233 | || | || | |||| |||| || || |||||| ||||||| ||| |||||||| Sbjct 130824 TTCTCT---GATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTC 130768 Query 19234 CAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGT 19289 ||| || || |||||||| ||||| || || |||||| | ||||| |||||||| Sbjct 130767 GAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq7208 Length=13341 Score = 224 bits (248), Expect = 3e-54 Identities = 407/584 (70%), Gaps = 11/584 (2%) Strand=Plus/Plus Query 18755 GTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTG-CAGCTACTATT 18813 ||||||| ||| | |||||||| ||||||| || | || ||| | || || | Sbjct 1707 GTCTTTACATCCGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACC-TC 1764 Query 18814 TGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCC 18872 ||| || ||||| |||||||| || || ||||| ||||| |||||||| || | ||||| Sbjct 1765 TGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCC 1824 Query 18873 TGTTGCAGGCAGTCTTCTTTATGGAAA-CAACATCATATCGGGAGCCGTCGTTCCGAG-- 18929 |||| || | | ||||| |||| ||| || || || || ||| | |||| Sbjct 1825 TGTTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTT 1884 Query 18930 CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATG 18989 | ||| || ||| || | || || |||||| |||| ||||| | |||||||||| Sbjct 1885 CTGCA--GCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATG 1942 Query 18990 GCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGC 19049 | | ||||| || || || | | || | || | |||||| | |||| || | Sbjct 1943 GTTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 2002 Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGT 19109 ||| ||||| || || ||||||||||| | | | || | ||| ||||||||| ||| Sbjct 2003 TTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGT 2062 Query 19110 TGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCA 19169 | |||| ||| |||||||||| || || | || | ||| | |||| || |||||| Sbjct 2063 TTCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCA 2122 Query 19170 AGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGT 19229 ||| ||| | | |||| |||| || || |||||| ||||||| ||| ||| Sbjct 2123 AGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGT 2182 Query 19230 ATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGT 19289 ||||||||| | || |||||||| | ||| || || ||||| | ||||| |||||||| Sbjct 2183 ATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGT 2242 Query 19290 GTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTA 19333 |||||||| || ||||| | ||| ||||| |||| |||| || Sbjct 2243 ATTCGGCGGTTC-CTATTCAATGCTATGCATAGTTC-CTTGGTA 2284 >seq2365 Length=77851 Score = 206 bits (228), Expect = 8e-49 Identities = 331/474 (70%), Gaps = 20/474 (4%) Strand=Plus/Plus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| |||||||| || || ||| |||| |||||||| || | ||||||| || Sbjct 13430 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 18936 || | | |||||||||||||| || || || || ||| | |||| | Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAAC------- 13540 Query 18937 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 18996 ||| | | || || ||||||||| ||||||| || |||||||||||| | ||| Sbjct 13541 ----TCG-ATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 18997 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 19056 || || || || | | || | || | |||||| | |||| || | ||| ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 19057 GGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTAC 19116 || || ||||||||||||| | | || || |||| ||||||||| |||||| | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 19117 TCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAG---GT 19173 |||||||||||| | || || |||| || ||| | | || || ||||||||| || Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 19174 TCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTC 19233 | || | || | ||||||||| || || |||||| ||||||| ||| |||||||| Sbjct 13776 TTCTCT---GATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTC 13832 Query 19234 CAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGT 19287 ||| || || |||||||| ||||| || || |||||| | ||||| ||| || Sbjct 13833 GAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 13886 >seq160 Length=286096 Score = 118 bits (130), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 19432 GGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACAT 19491 || ||||||||||| | || ||||| || || |||||||| |||||| |||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 19492 TTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACC 19551 ||||| |||||| |||||||| || || || ||||| | || | || | || || Sbjct 255191 TTCTT---GGCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 19552 ATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGT 19611 |||||||||||| | ||||| || || || ||||| || | |||| | | | ||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 19612 GTCATTGATACTTGGGCTGACATTCTCAA 19640 || ||| ||||||||||||| || |||| Sbjct 255308 GTTATTAATACTTGGGCTGATATCATCAA 255336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141125989383522