Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3117 96.9 3e-15 seq1263 93.3 4e-14 seq8279 87.8 2e-12 >seq3117 Length=57653 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGA-GACCGCCACGCTGGCCGAGCGCAT 46834 |||||| ||||||||||| ||||||||| ||| || ||| ||| |||||| | Sbjct 28780 AAGGCCGAGTGGGCCATGCGCTGGATCGAGGGCGGCGAGCGCTTCGC----CGAGCGGCT 28835 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTA 46894 || || ||||| ||||| ||| | || |||||||| ||| |||||| || | Sbjct 28836 CGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTG 28895 Query 46895 CATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGA 46954 | || | ||| | ||||||||||| || ||| |||||| | ||||| ||||| Sbjct 28896 GCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGA 28955 Query 46955 CGAAGGACTACACACGGACTTTGCGTGTCTC 46985 ||| || || ||| ||||||||||| ||| Sbjct 28956 CGAGGGTCTGCACTGCGACTTTGCGTGCCTC 28986 >seq1263 Length=124836 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGA-GACCGCCACGCTGGCCGAGCGCAT 46834 |||||| ||||||||||| ||||||||| ||| || ||| ||| |||||| | Sbjct 20091 AAGGCCGAGTGGGCCATGCGCTGGATCGAGGGCGGCGAGCGCTTCGC----CGAGCGGCT 20146 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTA 46894 || || ||||| ||||| ||| | || |||||||| ||| |||||| || | Sbjct 20147 CGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTG 20206 Query 46895 CATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGA 46954 | || | ||| | ||||||||||| || ||| |||||| | ||||| ||||| Sbjct 20207 GCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGA 20266 Query 46955 CGAAGGACTACACACGGACTTTGCGTGTCTC 46985 ||| || || ||| |||||||| || ||| Sbjct 20267 CGAGGGTCTGCACTGCGACTTTGCCTGCCTC 20297 >seq8279 Length=8219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || ||||||| || | ||| | | || || || || |||||||| || || |||| Sbjct 7181 CGTAAGCGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTA 7122 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 ||| ||| || ||||| || |||| | |||| || | ||| ||||||||||| || ||| Sbjct 7121 CGCCCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGAGGAATTCCT 7062 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || |||| | || | || || | |||||| || | | Sbjct 7061 TCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCCGAGCTCTCCACCTCTAGC 7002 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || ||||||||||| || | || |||||||| Sbjct 7001 GTGATCGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 6961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476530122477240