Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq7208 269 3e-67 seq691 253 2e-62 seq2365 224 1e-53 seq160 140 4e-28 >seq7208 Length=13341 Score = 269 bits (298), Expect = 3e-67 Identities = 434/617 (70%), Gaps = 5/617 (1%) Strand=Plus/Plus Query 157658 ACATCCCCGTGGAATAACTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTT 157717 |||| || |||| || ||||||| | | | |||| |||||| || || | || | Sbjct 1659 ACATGCCTGTGGTATCGCTTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATC 1717 Query 157718 GGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGT 157776 | ||||| ||||| ||||||| ||||| || | ||||||| ||||| || || | Sbjct 1718 CGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTAT 1776 Query 157777 CGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTC 157836 ||||||| |||| ||||| || || || ||||| || || | || || ||| |||||| Sbjct 1777 CGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTC 1836 Query 157837 ACTCATGTATGGTAA-CAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCG 157895 | || ||| | || ||| || ||||||||||| || ||||| ||| || ||| Sbjct 1837 TTTAATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCA 1896 Query 157896 GTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTG 157955 | | || || ||||| | || ||||| |||| | |||| || ||| | || || |||| Sbjct 1897 GATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTG 1956 Query 157956 GTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTG 158015 |||||| | || | || | |||||| | | || | | |||||||| |||| Sbjct 1957 GTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 2016 Query 158016 AGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTC 158075 | |||||||| || |||| |||| ||| || ||||| ||| | ||||| ||| Sbjct 2017 AATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTC 2076 Query 158076 CAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCG 158135 | || || || || | || | ||| || |||| ||| |||||||| ||| || Sbjct 2077 CTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTA 2136 Query 158136 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAAC 158195 ||| |||| || | || |||||||||||||| |||| ||| ||||||||| ||| | | Sbjct 2137 ATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGC 2196 Query 158196 ACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTC 158255 |||||||||||| ||| || || || || | ||||| ||||| |||||||| || || | Sbjct 2197 ACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-C 2255 Query 158256 TTTTCTCTGCTATGCAT 158272 | ||| |||||||||| Sbjct 2256 TATTCAATGCTATGCAT 2272 >seq691 Length=167025 Score = 253 bits (280), Expect = 2e-62 Identities = 358/498 (72%), Gaps = 4/498 (1%) Strand=Plus/Minus Query 157757 GCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATC 157816 |||||| || ||| || |||||||| | || || | || | || ||||| || || Sbjct 131194 GCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATT 131136 Query 157817 CGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTT 157876 ||| | || || |||||| | | ||||| ||||| || |||||||||| || || Sbjct 131135 CGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATT 131076 Query 157877 CCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGAC 157936 || | || || ||||| | || || ||||| || |||||||| ||||||||||| Sbjct 131075 CCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGAT 131016 Query 157937 GAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCG-GCAT 157995 || ||| | || || |||||||||| | || | || | || ||| | | | | | Sbjct 131015 GAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAG 130956 Query 157996 CTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGAT 158055 || || |||||||| |||||||||||||| || | || | ||||||| || ||||| Sbjct 130955 CT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT 130898 Query 158056 CTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTT 158115 ||| |||||||| ||||| || || || || | ||| || ||| | | || || | Sbjct 130897 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTAT 130838 Query 158116 CGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACAT 158175 ||||||||| |||||| |||| |||| || | || |||||||||||||| |||| || Sbjct 130837 CGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTAT 130778 Query 158176 GCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGC 158235 | |||||||| | | ||| ||||||||||||||||| || || || ||| | ||||| || Sbjct 130777 GATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 130718 Query 158236 TGGGGTATTCGGTGGATC 158253 ||| ||| |||| ||| Sbjct 130717 TGGTGTAGCTGGTGCATC 130700 >seq2365 Length=77851 Score = 224 bits (248), Expect = 1e-53 Identities = 338/479 (71%), Gaps = 15/479 (3%) Strand=Plus/Plus Query 157758 CAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCC 157817 ||||| || ||| || |||||||| |||| ||| || | || ||||| || || | Sbjct 13420 CAACTTCCTATTT-ATTATCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTC 13476 Query 157818 GCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTC 157877 ||| || || |||||| | | ||||| ||||| || ||||||||||| || ||| Sbjct 13477 ACGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTC 13536 Query 157878 CTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACG 157937 | ||| | || | || || ||||| || |||||| ||||||||||| | Sbjct 13537 C-------AACTCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATG 13584 Query 157938 AGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCT 157997 | ||| | || || |||||||||| | || | || | |||||| | | || | Sbjct 13585 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 13644 Query 157998 ATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCT 158057 | |||||||| |||||||||||||| || | || | ||||||| || ||||| Sbjct 13645 CTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTG 13704 Query 158058 GTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCG 158117 ||| ||| |||| ||||| || | || || | ||| || ||| | | || ||| | | Sbjct 13705 CTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTG 13764 Query 158118 GTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGC 158177 ||||||| |||||| |||| ||||||| | || |||||||||||||| |||| ||| Sbjct 13765 GTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGA 13824 Query 158178 TTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158236 |||||||| | | ||| ||||||||||||||||| || || || ||| | ||||| ||| Sbjct 13825 TTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 140 bits (154), Expect = 4e-28 Identities = 152/201 (76%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 158384 GGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 158443 || || || ||||| || ||||||||||| ||| ||||||||||| ||||| || ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 158444 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACC 158503 ||||| ||||| |||||||| || || ||||||||||| || | || | || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 158504 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 158563 |||||||||||||| || |||||||| |||||||| || | ||||| | || ||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 158564 GTGTTGAACACCTGGGCAGAT 158584 || | || || ||||| ||| Sbjct 255308 GTTATTAATACTTGGGCTGAT 255328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572926521454800