Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq691 237 2e-57 seq7208 235 6e-57 seq2365 214 2e-50 seq160 170 2e-37 >seq691 Length=167025 Score = 237 bits (262), Expect = 2e-57 Identities = 358/504 (71%), Gaps = 4/504 (1%) Strand=Plus/Minus Query 160035 TTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGAC 160094 ||| | ||||| || ||| || |||||||| | || || | || | || || || Sbjct 131200 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 131142 Query 160095 GGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCA 160154 || || || | || | |||||| | | ||||| ||||| || |||||||||| Sbjct 131141 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 131082 Query 160155 GTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCA 160214 || ||||| ||| || || || | || || || || || |||||||| ||||| Sbjct 131081 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 131022 Query 160215 CTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTTATC 160274 |||||||| ||| | || || |||||||||| | || | || | || ||| | | Sbjct 131021 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTT 130962 Query 160275 G-GCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCC 160333 | | | || || |||||||| ||||||||||||||| | | || | ||||||| || Sbjct 130961 GTGTAGCT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCC 130904 Query 160334 CTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATA 160393 ||||| ||| |||||||| ||||| || || || || ||||||| ||| | | || Sbjct 130903 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 130844 Query 160394 TCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAA 160453 || |||||||||| |||||| |||| |||| || | || |||||||||||||| || Sbjct 130843 CGCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAA 130784 Query 160454 CTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGG 160513 || ||| |||||||| | | ||| ||||| |||||||||||||| || |||||| | || Sbjct 130783 CTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 130724 Query 160514 CGTTGCTGGGGTATTCGGTGGATC 160537 || ||||| ||| |||| ||| Sbjct 130723 TGTAGCTGGTGTAGCTGGTGCATC 130700 >seq7208 Length=13341 Score = 235 bits (260), Expect = 6e-57 Identities = 415/598 (69%), Gaps = 5/598 (1%) Strand=Plus/Plus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 |||||| | | | ||||| ||||| || | || || || | ||||| || || || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 160078 ||||| || || | ||| | |||||| ||||| || || |||||||| |||| ||||| Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAA-CA 160137 || || || || || || || | ||| || || |||||| | || ||| | || || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 | || ||||||||||| || |||| | ||| || || | | || || || || Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 | || ||||| |||| ||||||| ||| | || || |||||||||| | || | | Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 160258 TATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACC 160317 | | |||||| | | || | | |||||||| ||||| ||||||||| | Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 160318 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 160377 |||| |||| ||| || ||||| ||| | ||||| |||| || || || || | | Sbjct 2035 GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAG 2094 Query 160378 CTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160437 || | ||| | | || ||| |||||||| ||| || ||| |||| || | || | Sbjct 2095 CTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAA 2154 Query 160438 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATC 160497 ||||||||||||| |||| ||| ||||||||| ||| | ||||| ||||||| ||||| Sbjct 2155 TCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATC 2214 Query 160498 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCA 160555 | || ||||| | || || ||||| |||||||| || || | ||| ||||||||| Sbjct 2215 CATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCA 2271 >seq2365 Length=77851 Score = 214 bits (236), Expect = 2e-50 Identities = 324/461 (70%), Gaps = 14/461 (3%) Strand=Plus/Plus Query 160060 TCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTT 160119 |||||||| |||| ||| || | || || || || || | || || | ||||| Sbjct 13437 TCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCACGAGCCTATTTTTGGTT 13494 Query 160120 CACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTG 160179 | | | ||||| ||||| || ||||||||||| || ||||| || | |||| Sbjct 13495 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACT-------CGATTG 13547 Query 160180 GTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTG 160239 || || || || || |||||| ||||| |||||||| ||| | || || |||| Sbjct 13548 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 13602 Query 160240 GTCCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTG 160299 |||||| | || | || | |||||| | | || | | |||||||| |||| Sbjct 13603 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 13662 Query 160300 AGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTC 160359 ||||||||||| | | || | ||||||| || ||||| ||| ||| |||| |||| Sbjct 13663 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 13722 Query 160360 CAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCG 160419 | || | || || ||||||| ||| | | || ||| | |||||||| |||||| | Sbjct 13723 CTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 13782 Query 160420 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAAC 160479 ||| ||||||| | || |||||||||||||| |||| ||| |||||||| | | ||| | Sbjct 13783 ATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 13842 Query 160480 ACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 160520 |||| |||||||||||||| || |||||| | || || ||| Sbjct 13843 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 170 bits (188), Expect = 2e-37 Identities = 158/200 (79%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 160668 GGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCAC 160727 ||||| || ||||| || |||||||||||||| ||||||||||| ||||| | ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 160728 TTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACC 160787 ||||| ||| || ||||||||||| || ||||||||||||||| | ||| |||| || Sbjct 255191 TTCTT---GGCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 160788 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGT 160847 |||||||||||||| || |||||||| |||||||| || | | ||| | |||||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 160848 GTACTGAACACCTGGGCAGA 160867 || | || || ||||| || Sbjct 255308 GTTATTAATACTTGGGCTGA 255327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559408821375800