Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq7208 264 1e-65 seq691 226 3e-54 seq2365 199 5e-46 seq160 152 6e-32 >seq7208 Length=13341 Score = 264 bits (292), Expect = 1e-65 Identities = 452/649 (70%), Gaps = 5/649 (1%) Strand=Plus/Plus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||| | | | ||||| ||||| || | || || || | ||||| || || || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | ||||| ||||| || || |||||||| |||| ||||| Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAA-CA 181158 || || || || || || || | ||| || || |||||| | || ||| | || || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 181159 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 181218 | || ||||||||||| || |||| | ||| || || | | || || || || Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 181219 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 181278 | || ||||| |||| ||||||| ||| | || || |||||||||| | || | | Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 181279 TCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACC 181338 | | |||||| | | || | | || ||||| |||||||||||||| || Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 181339 GCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTG 181398 | || |||| ||| || ||||| |||| | || || |||| || ||||| || | | Sbjct 2035 GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAG 2094 Query 181399 CTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 181458 || | ||| || |||| ||| |||||||| ||| ||| | | ||| | | || | Sbjct 2095 CTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAA 2154 Query 181459 TCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATC 181518 |||||||||| ||||||| ||| ||| ||||| ||| |||||||||| || | ||||| Sbjct 2155 TCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATC 2214 Query 181519 CCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACG 181578 | || ||||| || ||||| || |||||||| || ||||| || |||| ||| ||||| Sbjct 2215 CATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCATA 2273 Query 181579 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTC 181627 |||| ||||| || ||| | || | ||||| ||||||||||| || Sbjct 2274 GTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGAAACTGAATC 2322 >seq691 Length=167025 Score = 226 bits (250), Expect = 3e-54 Identities = 351/499 (70%), Gaps = 2/499 (0%) Strand=Plus/Minus Query 181056 TTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGAC 181115 ||| | |||||| || ||| || |||||||| | || || | || | || || || Sbjct 131200 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 131142 Query 181116 GGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCA 181175 || || || | || | |||||| | | ||||| ||||| || |||||||||| Sbjct 131141 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 131082 Query 181176 GTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCA 181235 || ||||| ||| || || || | || || || || || |||||||| ||||| Sbjct 131081 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 131022 Query 181236 CTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATC 181295 |||||||| ||| | || || |||||||||| | || | || | || ||| ||| Sbjct 131021 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACT 130963 Query 181296 GGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCC 181355 | | | || ||||| ||||| |||||||| || | | | ||||||| || Sbjct 130962 TGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCT 130903 Query 181356 TGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTAT 181415 ||||| ||||||||| || ||||| || ||||| || ||||||| ||| | | || Sbjct 130902 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 130843 Query 181416 CCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAAC 181475 || |||||||||| ||||||||| | ||| | | || ||||||||||| |||||| Sbjct 130842 GCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAAC 130783 Query 181476 TACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGT 181535 | ||| |||| ||| | | |||||||||||| || |||||||| || |||||||| ||| Sbjct 130782 TTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 130723 Query 181536 GTCGCAGGTGTATTTGGTG 181554 || || |||||| ||||| Sbjct 130722 GTAGCTGGTGTAGCTGGTG 130704 >seq2365 Length=77851 Score = 199 bits (220), Expect = 5e-46 Identities = 332/478 (69%), Gaps = 15/478 (3%) Strand=Plus/Plus Query 181063 CAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCC 181122 ||||| || ||| || |||||||| |||| ||| || | || || || || || | Sbjct 13420 CAACTTCCTATTT-ATTATCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTC 13476 Query 181123 GTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTC 181182 || || | |||||| | | ||||| ||||| || ||||||||||| || ||| Sbjct 13477 ACGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTC 13536 Query 181183 CATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATG 181242 || || | |||| || || || || || |||||| ||||| ||||||| Sbjct 13537 CAACT-------CGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATG 13584 Query 181243 AGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTT 181302 | ||| | || || |||||||||| | || | || | |||||| | | || | Sbjct 13585 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 13644 Query 181303 ATGCATACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCT 181362 | || ||||| ||||| |||||||| || | | | ||||||| || ||||| Sbjct 13645 CTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTG 13704 Query 181363 GTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCG 181422 ||||||| | || ||||| || |||| || ||||||| ||| | | || ||| | | Sbjct 13705 CTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTG 13764 Query 181423 GTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGC 181482 ||||||| ||||||||| | ||||| | || ||||||||||| ||||||| ||| Sbjct 13765 GTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGA 13824 Query 181483 TTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGC 181540 |||| ||| | | |||||||||||| || |||||||| || |||||||| ||||| || Sbjct 13825 TTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 152 bits (168), Expect = 6e-32 Identities = 162/213 (76%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 181687 ACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGC 181746 ||||||| |||||||| || ||||||||||||||| ||||||||||| ||||| | | Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 181747 ACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCA 181806 ||||||| || || ||||||||||| || ||||||||||| || | || | || | Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 181807 CCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGAC 181866 | |||||||| ||||| ||||| ||||| |||||||| ||| | | || | ||||| | Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 255305 Query 181867 GTGTCCTCAACACCTGGGCAGACGTGCTCAACC 181899 | || | || || ||||| || | |||||| Sbjct 255306 GCGTTATTAATACTTGGGCTGATATCATCAACC 255338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614513045863520