Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq7208 264 2e-65 seq691 212 9e-50 seq2365 179 5e-40 seq160 136 6e-27 >seq7208 Length=13341 Score = 264 bits (292), Expect = 2e-65 Identities = 440/629 (70%), Gaps = 5/629 (1%) Strand=Plus/Plus Query 174488 AACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGC 174547 |||||| ||| |||||||| || | ||||| |||||| | ||||| ||||| || || | Sbjct 1697 AACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 1755 Query 174548 CGCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAA 174606 ||||| | ||| || |||||||| ||| | | ||||| ||||| || || || || | Sbjct 1756 TGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTA 1814 Query 174607 TCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAA-CAACATCATCTCTGGTGCAGTT 174665 | | ||| || || |||||| | || ||| |||| ||| || ||||||||||| || Sbjct 1815 TTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATT 1874 Query 174666 GTTCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTC 174725 ||||| ||| || ||| | | || || |||||| | || ||||| || | Sbjct 1875 ATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTT 1934 Query 174726 GACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGT 174785 || |||||| | ||||| |||||||||| | ||| |||| | |||||| | ||||| Sbjct 1935 GATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGT 1994 Query 174786 ATCTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGG 174845 | |||||||| ||||| |||||||| || |||| |||| | | |||||| Sbjct 1995 GTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGG 2054 Query 174846 ATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCT 174905 || ||| | || || | || |||||||| ||| |||| | ||| || |||| ||| Sbjct 2055 ATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCT 2114 Query 174906 TTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTAC 174965 |||||||| || || | | ||| | || || |||||||| || ||||||| Sbjct 2115 ACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTT 2174 Query 174966 ATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTC 175025 ||| || ||||| ||| | || |||||| | | ||| || || ||||| || || || Sbjct 2175 ATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTA 2234 Query 175026 GCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCA 175085 || ||||| ||||| ||||| | ||| || |||||| |||| | || |||||| Sbjct 2235 GCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCATAGTTCCTTGGTAACCTCTAGT 2293 Query 175086 CTTGTCCGTGAGACAACTGAAACTGAGTC 175114 | || | ||||| ||||||||||| || Sbjct 2294 TTGCTCAGGGAGACCACTGAAACTGAATC 2322 >seq691 Length=167025 Score = 212 bits (234), Expect = 9e-50 Identities = 342/488 (70%), Gaps = 4/488 (1%) Strand=Plus/Minus Query 174547 CCGCAACTGTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAA 174606 |||||||| | ||| |||||||| ||| | | || | ||| | || || || || | Sbjct 131196 CCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTA 131138 Query 174607 TCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTG 174666 | || | || | |||||| | | ||||||||||| || |||||||||| || Sbjct 131137 TTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTA 131078 Query 174667 TTCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCG 174726 |||| | || || ||||| | || || |||||||| |||||||| || | || | Sbjct 131077 TTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTG 131018 Query 174727 ACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTG-GT 174785 | |||||| | ||||| |||||||||| | ||| |||| | || ||| | ||| || Sbjct 131017 ATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGT 130958 Query 174786 ATCTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGG 174845 | || |||||||| |||||||||||||| || || | |||||| |||||| Sbjct 130957 AGCTTGT--TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGG 130900 Query 174846 ATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCT 174905 || ||| ||||| || || || |||||||| ||| | || || ||| | | || || Sbjct 130899 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCT 130840 Query 174906 TTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTAC 174965 |||||||||| ||||| || | ||| | || || |||||||| || ||||||| Sbjct 130839 ATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTT 130780 Query 174966 ATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTC 175025 ||| | || ||| | | ||| || |||||| | ||||| || || |||||||| || || Sbjct 130779 ATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 130720 Query 175026 GCAGGTGT 175033 || ||||| Sbjct 130719 GCTGGTGT 130712 >seq2365 Length=77851 Score = 179 bits (198), Expect = 5e-40 Identities = 320/467 (69%), Gaps = 14/467 (3%) Strand=Plus/Plus Query 174561 TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTA 174620 || |||||||| ||| | | ||| || | | || || || || || | || || | Sbjct 13430 TTTATTATCGCCTTCATCGCAGCTTCC--AATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 174621 GCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAAC 174680 |||||| | | ||||||||||| || ||||||||||| || |||| ||| Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 13540 Query 174681 GCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTAC 174740 | || | || || |||||||| |||||| || | || || |||||| | ||| Sbjct 13541 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 174741 AACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATG 174800 || |||||||||| | ||| |||| | |||||| | ||||| | |||||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 174801 GGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATAC 174860 || |||||||||||||| || || | |||||| |||||||| ||| ||| | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 174861 TCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCA 174920 || || || ||| |||| ||| | || || ||| | | || ||| | |||||||| Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 174921 TTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAA 174980 ||||| || | ||||| || || |||||||| || ||||||| ||| | || ||| | Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 174981 GCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGC 175027 | ||| || |||||| | ||||| || || |||||||| || || || Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 136 bits (150), Expect = 6e-27 Identities = 151/201 (75%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 175176 GGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCAC 175235 || || || ||||| || ||||||||||| ||| ||||||||||| || || | ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 175236 TTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACA 175295 ||||| || || ||||| || || || ||||||||||| || | ||| || || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 175296 ATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGA 175355 |||||||||||||| ||||||||||| |||||||| ||||| | || | |||||| | Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 175356 GTATTGAACACCTGGGCGGAT 175376 || | || || ||||| ||| Sbjct 255308 GTTATTAATACTTGGGCTGAT 255328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729805429850920