Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq691 262 5e-65 seq7208 244 1e-59 seq2365 228 1e-54 seq160 136 5e-27 >seq691 Length=167025 Score = 262 bits (290), Expect = 5e-65 Identities = 360/498 (72%), Gaps = 4/498 (1%) Strand=Plus/Minus Query 178942 GCAACTATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATC 179001 |||||| || ||| || | || ||| | ||||| | ||| | |||||||| || || Sbjct 131194 GCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATT 131136 Query 179002 CGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTC 179061 || | || | |||||| | | ||||||||||| || |||||||||| || | Sbjct 131135 CGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATT 131076 Query 179062 CCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGAT 179121 |||| || || || || | || || ||||| || |||||||| ||||| || ||| Sbjct 131075 CCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGAT 131016 Query 179122 GAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCG-GCAT 179180 || ||| | || || |||||||||| | || | || | || ||| | | | | | Sbjct 131015 GAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAG 130956 Query 179181 CTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGAT 179240 || || |||||||| ||||||||||||||| || | |||| ||||||| ||| ||||| Sbjct 130955 CT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT 130898 Query 179241 CTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTT 179300 ||||||||| || || || || || ||||| | ||| || ||| | | || || | Sbjct 130897 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTAT 130838 Query 179301 CGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACAT 179360 ||||||||| ||||||||||| |||| || | || |||||||||||||| |||| || Sbjct 130837 CGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTAT 130778 Query 179361 GCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGC 179420 | |||||||| | | ||| ||||||||||||||||| || || || ||| | ||||| || Sbjct 130777 GATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 130718 Query 179421 TGGGGTATTCGGTGGATC 179438 ||| ||| |||| ||| Sbjct 130717 TGGTGTAGCTGGTGCATC 130700 >seq7208 Length=13341 Score = 244 bits (270), Expect = 1e-59 Identities = 417/598 (70%), Gaps = 5/598 (1%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | | | |||| ||||| ||| || | || | | ||||| ||||| || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | ||||||| ||||| || || | || ||| | ||||| || Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAA-CA 179038 ||| || |||||||| || || | ||| || || |||||| | || ||| |||| || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 179039 ACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCA 179098 | || ||||||||||| || | || ||| || || | | || || ||||| Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 179099 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAG 179158 | || ||||| |||| | ||||| ||| | || || |||||||||| | || | | Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 179159 TCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACC 179218 | | |||||| | | || | | |||||||| ||||| ||||||||| || Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 179219 GTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTG 179278 || | |||| |||||| ||||| |||| | || || | || || || ||||| | | Sbjct 2035 GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAG 2094 Query 179279 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTA 179338 | | ||| | |||| ||| |||||||| ||| ||| ||| |||| || | || | Sbjct 2095 CTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAA 2154 Query 179339 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 179398 ||||||||||||| |||| ||| ||||||||| ||| | ||||||||||||| ||| | Sbjct 2155 TCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATC 2214 Query 179399 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 179456 | || || || | ||||| ||||| |||||||| || || || ||| ||||||||| Sbjct 2215 CATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCA 2271 >seq2365 Length=77851 Score = 228 bits (252), Expect = 1e-54 Identities = 339/479 (71%), Gaps = 15/479 (3%) Strand=Plus/Plus Query 178943 CAACTATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCC 179002 ||||| || ||| || | || ||| | ||||| ||| | |||||||| || || | Sbjct 13420 CAACTTCCTATTT-ATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTC 13476 Query 179003 GTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCC 179062 || || | |||||| | | ||||||||||| || ||||||||||| || | | Sbjct 13477 ACGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTC 13536 Query 179063 CAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATG 179122 ||| | | |||| || || ||||| || |||||| ||||| || |||| Sbjct 13537 CAACT-------CGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATG 13584 Query 179123 AGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCT 179182 | ||| | || || |||||||||| | || | || | |||||| | | || | Sbjct 13585 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 13644 Query 179183 ATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCT 179242 | |||||||| ||||||||||||||| || | |||| ||||||| ||| ||||| Sbjct 13645 CTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTG 13704 Query 179243 GTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCG 179302 ||||||| | || || || || | ||||| | ||| || ||| | | || ||| | | Sbjct 13705 CTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTG 13764 Query 179303 GTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGC 179362 ||||||| ||||||||||| ||||||| | || |||||||||||||| |||| ||| Sbjct 13765 GTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGA 13824 Query 179363 TTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 179421 |||||||| | | ||| ||||||||||||||||| || || || ||| | ||||| ||| Sbjct 13825 TTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 136 bits (150), Expect = 5e-27 Identities = 159/213 (75%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 179557 GTCGCAGC-ACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTC 179615 ||||||| | | || || || ||||| || |||||||||||||| || |||||||| Sbjct 255118 GTCGCAGTGAAACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTC 255177 Query 179616 ACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCT 179675 || ||||| |||||||| ||||| ||||| || || || ||||||||||||||| | Sbjct 255178 TCGTTCTTTACACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTT 255234 Query 179676 TGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGA 179735 || | || ||||| |||||||| || |||||||| |||||||| || | |||| Sbjct 255235 AGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 255294 Query 179736 CGGTCAAGGACGTGTCCTTAACACATGGGCGGA 179768 | ||||| || || |||| || ||||| || Sbjct 255295 TAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 255327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610225775305920