Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8286 96.9 5e-15 seq6533 96.9 5e-15 seq4598 96.9 5e-15 seq446 93.3 6e-14 seq1263 89.7 7e-13 seq3117 84.2 3e-11 >seq8286 Length=8159 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | ||| | || | | ||| |||| ||| ||| Sbjct 971 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 912 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | ||||||||||| ||||||||| || | || |||||||| || || Sbjct 911 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTGGCTCGAATATTGTGAACTGAA 852 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 851 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGATT 792 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| || || |||||||| Sbjct 791 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 751 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || ||||| || | || || || || || || ||||| | ||| | ||||| Sbjct 649 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 590 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||| || || ||||| || || | ||| || || | | || | ||| || Sbjct 589 GTATGTTTGGATGGCAGATTCAATGTCATCCATATGTATCCCCACTGAAACTCTCATTAA 530 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| ||||| |||| ||| || ||| | | || || ||||| || | || || Sbjct 529 CATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCGAG 470 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||| |||||||| |||| || |||||| || ||||||||||| Sbjct 469 AGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 422 >seq6533 Length=17200 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | ||| | || | | ||| |||| ||| ||| Sbjct 972 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 913 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | ||||||||||| ||||||||| || | || |||||||| || || Sbjct 912 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAACTGAA 853 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 852 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGATT 793 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| || || |||||||| Sbjct 792 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 752 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || ||||| || | || || || || || || ||||| | ||| | ||||| Sbjct 650 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 591 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||| || || ||||| || || | ||| || || | | || | ||| || Sbjct 590 GTATGTTTGGATGGCAGATTCAATGTCATCCATATGTATCCCCACTGAAACTCTCATTAA 531 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| ||||| |||| ||| || ||| | | || || ||||| || | || || Sbjct 530 CATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCGAG 471 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||| |||||||| |||| || |||||| || ||||||||||| Sbjct 470 AGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 423 >seq4598 Length=35162 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | ||| | || | | ||| |||| ||| ||| Sbjct 34310 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 34369 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | ||||||||||| ||||||||| || | || |||||||| || || Sbjct 34370 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAACTGAA 34429 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 34430 ACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGATT 34489 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| || || |||||||| Sbjct 34490 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 34530 >seq446 Length=200473 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | ||| | || | | ||| |||| ||| ||| Sbjct 90947 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 90888 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | ||||||||||| ||||||||| || | || |||||||| | || Sbjct 90887 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAGCTGAA 90828 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 90827 ACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGATT 90768 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| || || |||||||| Sbjct 90767 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 90727 >seq1263 Length=124836 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || || ||||| || | || | ||||| || || ||||| Sbjct 20294 GCAGGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAG 20235 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || || || |||||||| || ||||| ||| |||||||| ||||||| Sbjct 20234 GCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGC-GCAGAAAGATCCCGAAAAGA 20176 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 20175 AGATGCCCTCGAC 20163 >seq3117 Length=57653 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || ||||| || || || ||||| || | || | ||||| || || ||||| Sbjct 28983 GCACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAG 28924 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || || || |||||||| || ||||| ||| |||||||| ||||||| Sbjct 28923 GCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGC-GCAGAAAGATCCCGAAAAGA 28865 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 28864 AGATGCCCTCGAC 28852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686791948226760