Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3496 105 6e-18 seq2944 105 6e-18 seq990 104 2e-17 seq559 100 2e-16 seq212 95.1 1e-14 seq463 89.7 4e-13 seq4941 87.8 2e-12 seq8345 86.0 5e-12 seq3810 82.4 6e-11 seq3775 82.4 6e-11 >seq3496 Length=52490 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 27173 GCCGCCGCGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 27232 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| |||| || ||||| ||||||||| | || || ||||| || |||||||| Sbjct 27233 GAGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCGG 27292 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | || || || Sbjct 27293 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 27352 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 27353 CTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 27400 >seq2944 Length=63207 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 48235 GCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 48176 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||||| |||| |||||||| || || ||| | ||||| ||||| || |||||||| Sbjct 48175 GAGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGG 48116 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | | || || Sbjct 48115 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGACTCCAC 48056 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 48055 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 48008 >seq990 Length=138715 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || ||||| |||||||| || | |||| | || || Sbjct 23106 ACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCC 23165 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| || |||| |||||||| || ||||| || | ||||| || || | Sbjct 23166 AGCTGCTTACCAGCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 23225 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | | || ||||||| || || | ||| Sbjct 23226 ATCTTCGCCTTCACGTTATCAATGGTGTCCGAAGACTCCACTTCTAAGGTGATGGTCTTG 23285 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || ||||||||||| |||||| Sbjct 23286 CCAGTAAGCGTCTTCACAAAGATCTGCATA 23315 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| |||| || || || || || Sbjct 23802 GTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCCAGTTGCTTGCCA 23861 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| |||||||| || | ||||| || || ||||||| || Sbjct 23862 GCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 23921 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||||| || || || || | ||||| || || || Sbjct 23922 ACGTTGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 23981 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 23982 TTCACGAAGATCTGCAT 23998 >seq559 Length=180664 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 32353 GCCGCCGCGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 32294 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| |||| || ||||| || |||||| | || || ||||| || |||||||| Sbjct 32293 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGG 32234 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | || || || Sbjct 32233 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 32174 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 32173 CTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 32126 >seq212 Length=258318 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| |||||||| || | |||| | || || Sbjct 16694 ACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCC 16753 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| || |||| |||||||| || ||||| || | ||||| || || | Sbjct 16754 AGCTGCTTACCAGCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGG 16813 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | | || || |||| || || | ||| Sbjct 16814 ATCTTCGCCTTCACGTTATCAATGGTGTCCGAAGACTCCACCTCTAAGGTGATGGTCTTG 16873 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || ||||||||||| |||||| Sbjct 16874 CCAGTAAGCGTCTTCACAAAGATCTGCATA 16903 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| |||| || || || || || Sbjct 17390 GTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCCAGTTGCTTGCCA 17449 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| |||||||| || | ||||| || || ||||||| || Sbjct 17450 GCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 17509 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||||| || || || || | ||||| || || || Sbjct 17510 ACGTTGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 17569 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 17570 TTCACGAAGATCTGCAT 17586 >seq463 Length=196461 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||||| || || || |||||||| || || |||| |||| | || ||||| || || || Sbjct 43194 GTAGACTCCTTCTGGATATTGTAATCAGCCAATGT-GCGCCCATCCTCGAGTTGCTTCCC 43136 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | ||||| ||||| || || || || | || || || || |||||| || Sbjct 43135 AGCAAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGGATCTTTGCCTT 43076 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | ||||||| | ||||| || ||||| |||| || || || ||||| Sbjct 43075 CACATTATCGATTGTGTCTGAGCTCTCAACCTCAAGAGTAATAGTCTTTCCAGTGAGAGT 43016 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 43015 CTTCACAAAGATCTGCAT 42998 >seq4941 Length=31460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || || ||||| || || Sbjct 19543 GTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGACCATCCTCAAGCTGCTTGCCA 19602 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| ||| Sbjct 19603 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 19662 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| || || || Sbjct 19663 ACGTTGTCAATGGTGTCCGAAGACTCCACCTCCAGGGTGATGGTCTTGCCGGTAAGGGTC 19722 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 19723 TTCACAAAGATCTGCATA 19740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| || || |||| |||| || ||||| || || Sbjct 20492 GTGGACTCCTTCTGGATGTTGTAGTCAG-CAAGTGTGCGGCCGTCCTCAAGCTGCTTCCC 20550 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 20551 AGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 20610 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | || ||||| || || || || | ||||| || || || Sbjct 20611 GACGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 20670 Query 27230 TTTCACAAAGATTTGCATAGCTGCTAAAA 27258 ||||| || || ||||| |||| |||| Sbjct 20671 CTTCACGAAAATCTGCAT--CTGCAAAAA 20697 >seq8345 Length=7904 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| | |||| | || || ||||| || || Sbjct 7291 GTGGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTGCGGCCATCCTCCAGCTGCTTCCCT 7350 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | ||| || || || ||||||| ||| Sbjct 7351 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATCTTGGCCTTC 7410 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | ||||| || || || || | ||||| |||| || Sbjct 7411 ACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAGTGTGATGGTCTTGCCAGTCAAGGTC 7470 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 7471 TTCACAAAGATCTGCAT 7487 >seq3810 Length=45416 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| | || || ||||| || || Sbjct 45330 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 45271 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| || || ||||||| || Sbjct 45270 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 45211 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||| || || || || || | ||||| || || || Sbjct 45210 ACGTTGTCGATTGTGTCAGATGATTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 45151 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 45150 TTGACAAAGATCTGCATA 45133 >seq3775 Length=45385 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | | || |||| || ||||| || || Sbjct 69 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGCTTGCCA 128 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 129 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 188 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||| || || || || || | || || || || || Sbjct 189 ACGTTGTCGATTGTGTCAGATGATTCCACCTCAAGGGTGATGGTCTTACCGGTGAGGGTC 248 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 249 TTGACAAAGATCTGCATA 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424863920513208