Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1353 114 2e-20 seq6706 111 2e-19 seq4862 109 7e-19 seq2823 109 7e-19 seq214 95.1 2e-14 seq1754 89.7 6e-13 seq4598 84.2 3e-11 >seq1353 Length=118606 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||||| || || || || |||||| || ||||||||||| || Sbjct 95390 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCTGGCATGAGCCC 95331 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 95330 GCGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACGCA 95271 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || ||||| | ||| || ||||||||| Sbjct 95270 GGCGAACGCGACAAGACGCTCGGCGAAG 95243 >seq6706 Length=16376 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| || || ||| | ||||| | || |||||||| || Sbjct 12460 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 12401 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || || || | ||||| ||||||||||| || | | |||||| | Sbjct 12400 ATAACAATTATTCCGGTGTTTCCCTCAAAACCATCCATCTCAGTCAAAAGTTGATTGAGG 12341 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632 || || || || ||||||||| | | ||||| | | ||| | || |||||| Sbjct 12340 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTTCCAACCGCA 12281 Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 ||||| ||||||| || || || || || ||| || ||| | | ||| ||||| Sbjct 12280 TCAATTTCATCAACAAACACTATGCAAGGGGCATTCTCCTTGGCCTTCTTAAACAGATCA 12221 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || |||| |||||| ||||| ||||||||||||||||| Sbjct 12220 CGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAA 12180 >seq4862 Length=32157 Score = 109 bits (120), Expect = 7e-19 Identities = 217/322 (67%), Gaps = 12/322 (4%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 ||||||| |||||||| || || | || ||||| || || || ||||| || ||| | Sbjct 31362 CAAAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCC-- 31419 Query 11598 GCATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGA 11651 ||||||| |||| || ||| | || || || || |||||||||||||||| Sbjct 31420 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGA 31475 Query 11652 CAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 |||| || || || | ||| | || ||||| || | ||||| ||||| | Sbjct 31476 CAATGCACGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGATGCACCGA 31535 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATT 11771 |||| ||||| | ||| || || | | ||||| ||| || ||| || || | | Sbjct 31536 CACCGACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCT 31595 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831 | || |||| ||| || || ||||| || || || || || ||| ||| |||| ||| Sbjct 31596 CCCCGGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGGAGGC 31655 Query 11832 CGCCTCGGGGGATCTTGGCACC 11853 || |||||||||||| || Sbjct 31656 ATCCCTTGGGGATCTTGGCTCC 31677 >seq2823 Length=63626 Score = 109 bits (120), Expect = 7e-19 Identities = 216/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 ||||||| ||||| |||||||| | || ||||| || || || |||||||| ||| | Sbjct 63473 CAAAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCAC 63414 Query 11598 G-CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | ||||||| || ||| | || || |||||||||||||||||||||||||| Sbjct 63413 CACCGAGC-CCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACAATG 63355 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | || | || ||||| || | ||||| ||||| ||||| Sbjct 63354 CAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACACCG 63295 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 ||||| | ||| || || | | ||| | ||| || ||| || || | || || Sbjct 63294 ACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCCCCA 63235 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 | || ||| ||||||||||| || || || || || || || |||| ||| || Sbjct 63234 GAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCATCCC 63175 Query 11837 CGGGGGATCTTGGCACC 11853 ||||||||||| || Sbjct 63174 TTTGGGATCTTGGCTCC 63158 >seq214 Length=259295 Score = 95.1 bits (104), Expect = 2e-14 Identities = 172/251 (69%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 11489 ATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCC 11548 ||||| | || || ||||| |||||||| | || ||||| | ||||| |||||| Sbjct 154416 ATATCAGCTCGGTTGGTGGCAGCAATAACAATTATTCCAGTGTTCCCTTCAAAACCATCC 154357 Query 11549 ATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACC- 11607 |||||||| | | || || | || || || || ||||||||| | |||||| Sbjct 154356 ATCTCGGTCAAAAGCTGGTTCAGGGTCTGCTCCCTTTCATCATTTCC------ACCACCG 154303 Query 11608 --AGCACTGCGT---TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 | || | | | ||| | || || |||||||| ||||||| || || || || ||| Sbjct 154302 ATACCAGTTCCTCTCTGCCTTCCAACAGCATCAATTTCATCAACAAACACTATGCAAGGT 154243 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| || ||| | | ||| ||||| || || | ||||| ||||| |||||| Sbjct 154242 GCATTCTCCTTGGCCTTCTTAAACAGATCACGGACACGGGATGCACCAACACCGACAAAC 154183 Query 11723 ATCTCCACAAA 11733 ||||||||||| Sbjct 154182 ATCTCCACAAA 154172 >seq1754 Length=96608 Score = 89.7 bits (98), Expect = 6e-13 Identities = 171/251 (68%), Gaps = 12/251 (5%) Strand=Plus/Plus Query 11489 ATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCC 11548 ||||| | || || ||||| |||||||| | || ||||| | ||||| |||||| Sbjct 22989 ATATCAGCTCGGTTGGTGGCAGCAATAACAATTATTCCAGTGTTCCCTTCAAAACCATCC 23048 Query 11549 ATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACC- 11607 |||||||| | | || || | || || || || ||||||||| | |||||| Sbjct 23049 ATCTCGGTCAAAAGCTGGTTCAGGGTCTGCTCCCTTTCATCATTTCC------ACCACCG 23102 Query 11608 --AGCACTGCGT---TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 | || | | | ||| | || || |||||||| ||||||| || || || || ||| Sbjct 23103 ATACCAGTTCCTCTCTGCCTTCCAACAGCATCAATTTCATCAACAAACACTATGCAAGGT 23162 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| || ||| | | ||| ||||| || || | ||||| ||||| |||||| Sbjct 23163 GCATTCTCCTTGGCCTTCTTAAACAGATCACGGACACGGGATGCACCAACACCGACAAAC 23222 Query 11723 ATCTCCACAAA 11733 |||||||| || Sbjct 23223 ATCTCCACGAA 23233 >seq4598 Length=35162 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 || ||| || || || |||||||||||||| || ||||||| || || | ||| | Sbjct 34617 CACCTGGGGCCTGGGAGTACCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCG 34676 Query 111997 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 || |||||| | |||||| | | | |||| |||||||| ||| ||| || || | Sbjct 34677 CTGAGACATCAGATGGTATGTTTTGATGGCAGATTCAATGTCATCCTTGTGTATCCCCAC 34736 Query 112057 TGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 112116 || || | ||| ||||||| ||||| |||| | | | ||| | ||| || ||| Sbjct 34737 TGAAACTCTCATTAACATGTGTTGTGGTCTTTCGACAACCTTCCCACCAAGC--TTCAAG 34794 Query 112117 A--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | || | |||| || || |||| |||||||| || |||| |||||| Sbjct 34795 AGGTAAGACCTCTCCAGAGTCTTGAACCCAAAGTAGTCATAATCGAAGTCCC 34846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627925163906400