Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6706 140 4e-28 seq1353 136 5e-27 seq3117 131 2e-25 seq214 131 2e-25 seq1263 129 7e-25 seq1754 125 8e-24 seq4862 87.8 2e-12 seq6990 84.2 3e-11 seq2823 82.4 9e-11 >seq6706 Length=16376 Score = 140 bits (154), Expect = 4e-28 Identities = 274/397 (69%), Gaps = 10/397 (3%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| || || ||| | |||||| | || || || || || Sbjct 12460 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 12401 Query 9587 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 || |||| || || |||||| | |||||||||||||||| ||||||||||| || | Sbjct 12400 ATAACAATTATTCCGGTGTTTCCCT--CAAAACCATCCATCTCAGTCAAAAGTTGATTGA 12343 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9704 || || |||| ||||||||| | | ||||| | | ||| |||| || | Sbjct 12342 GGGTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTTCCAACCG 12283 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAG 9762 ||||||| ||||||| || || ||||| || ||| || | | | |||| ||| || Sbjct 12282 CATCAATTTCATCAACAAACACTATGCAAGGGGCATTCTC-CTTG-GCCTTCTTAAACAG 12225 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 ||| || || || ||| || ||||| ||||||||||||||||| | | | | | | Sbjct 12224 ATCACGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAACTCAGACCCTG-ATA 12166 Query 9823 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || ||| || || || ||| || ||||| ||| ||| || | ||||||||| | Sbjct 12165 TAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCTTTGGCAAGCAAAGTCTTACCAG 12106 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918 | || || ||| | || ||| ||||| ||||| Sbjct 12105 TCCCAGGAGGACCAACAAGCAGGACACCTTTAGGAAT 12069 >seq1353 Length=118606 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || || ||||| ||||||||||| || || || Sbjct 95243 CTTCGCCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 95302 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct 95303 CTGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGA 95362 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 95363 GCTCATCTCCCGCGACGAGGGCCTGCAC 95390 >seq3117 Length=57653 Score = 131 bits (144), Expect = 2e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| |||||||| || || || || Sbjct 28821 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 28880 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||||||||| || || |||||||| || ||| ||||||||||| Sbjct 28881 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 28940 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||| ||||| || |||||||| || ||| || |||||| Sbjct 28941 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCG 28980 >seq214 Length=259295 Score = 131 bits (144), Expect = 2e-25 Identities = 258/372 (69%), Gaps = 20/372 (5%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | || || | |||||| | || || || || || Sbjct 154452 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCAGCA 154393 Query 9587 ATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 || |||| || || || ||| | ||||||||||||||||| |||||||| ||||| | Sbjct 154392 ATAACAATTATTCCAGTGTTCCCT-TCAAAACCATCCATCTCGGTCAAAAGCTGGTTCAG 154334 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGT---TGCTTTCC 9699 || || |||| ||||||||| | |||||| | || | | | ||| |||| Sbjct 154333 GGTCTGCTCCCTTTCATCATTTCC------ACCACCGATACCAGTTCCTCTCTGCCTTCC 154280 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 9757 || |||||||| ||||||| || || ||||| ||| ||| || | | | |||| | Sbjct 154279 AACAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTC-CTTG-GCCTTCTTA 154222 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || ||||| || ||||| || || ||||| ||||||||||||||||| | | | | Sbjct 154221 AACAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACAAACTCAGAGCCC 154162 Query 9818 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 | | || | || ||| || || || ||| || ||||| || ||| || | |||||| Sbjct 154161 G-ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTT 154103 Query 9877 ACCCGTACCTGG 9888 ||| || || || Sbjct 154102 ACCGGTCCCAGG 154091 >seq1263 Length=124836 Score = 129 bits (142), Expect = 7e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| |||||||| || || || || Sbjct 20132 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 20191 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||||||||| || || |||||||| || ||| ||||||||||| Sbjct 20192 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 20251 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| ||||| || |||||||| || ||| || ||||| Sbjct 20252 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGC 20290 >seq1754 Length=96608 Score = 125 bits (138), Expect = 8e-24 Identities = 257/372 (69%), Gaps = 20/372 (5%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | || || | |||||| | || || || || || Sbjct 22953 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCAGCA 23012 Query 9587 ATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 || |||| || || || ||| | ||||||||||||||||| |||||||| ||||| | Sbjct 23013 ATAACAATTATTCCAGTGTTCCCT-TCAAAACCATCCATCTCGGTCAAAAGCTGGTTCAG 23071 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGT---TGCTTTCC 9699 || || |||| ||||||||| | |||||| | || | | | ||| |||| Sbjct 23072 GGTCTGCTCCCTTTCATCATTTCC------ACCACCGATACCAGTTCCTCTCTGCCTTCC 23125 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 9757 || |||||||| ||||||| || || ||||| ||| ||| || | | | |||| | Sbjct 23126 AACAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTC-CTTG-GCCTTCTTA 23183 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || ||||| || ||||| || || ||||| |||||||||||||| || | | | | Sbjct 23184 AACAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACGAACTCAGAGCCC 23243 Query 9818 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 | | || | || ||| || || || ||| || ||||| || ||| || | |||||| Sbjct 23244 G-ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTT 23302 Query 9877 ACCCGTACCTGG 9888 ||| || || || Sbjct 23303 ACCGGTCCCAGG 23314 >seq4862 Length=32157 Score = 87.8 bits (96), Expect = 2e-12 Identities = 217/327 (66%), Gaps = 22/327 (7%) Strand=Plus/Plus Query 9612 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 9671 |||| || |||||||| |||| || |||||||| || || |||| || || || | Sbjct 31362 CAAAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCC-- 31419 Query 9672 GCATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGA 9725 ||||||| |||| || ||| | || ||||| || |||||||||||||||| Sbjct 31420 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGA 31475 Query 9726 CGATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG 9781 | ||||| || ||| || || | || ||||| |||| || | || Sbjct 31476 CAATGCACGGCGCCTTGGCCTTGGCCTTC----TCGAAGAGGTCCCTGACCCTGGATGCA 31531 Query 9782 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 9841 || ||||| ||||| | ||| || || | | ||| | || || |||||| || Sbjct 31532 CCGACACCGACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCG 31591 Query 9842 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 9901 | || || || | ||| || || || ||||| ||||| || || ||| ||| ||||| Sbjct 31592 GCCTCCCCGGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGG 31651 Query 9902 AGGGCACCTCGT-GGAATCTTGGCGCC 9927 | |||| | | | || |||||||| || Sbjct 31652 A-GGCATCCCTTGGGGATCTTGGCTCC 31677 >seq6990 Length=14915 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 7283 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCG 7342 ||||| | |||||| || || ||| |||| |||||| ||||| | | | ||||| || Sbjct 5069 CCACAGAGCGAGGACACGCCGTTCCACCCGCGCTCGCCCTACGCCGCCGCCAAGGTCGCC 5010 Query 7343 GCACATTGGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATC 7402 || || ||| | | || ||||| ||| | ||||| || || || ||| ||| | Sbjct 5009 GCGCACTGGTACACCGTCAACTACCGAGAGGCGTACGGCCTCTTCGCCTGCAACGGCGTA 4950 Query 7403 CTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCAC 7446 ||||||||||| || |||||| | || |||| |||| ||||| Sbjct 4949 CTCTTCAACCACGAGTCACCGCGCCGCGGTGAGAACTTCGTCAC 4906 >seq2823 Length=63626 Score = 82.4 bits (90), Expect = 9e-11 Identities = 210/317 (66%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 9612 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 9671 |||| || ||||| || || | || |||||||| || || |||| ||||| || | Sbjct 63473 CAAAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCAC 63414 Query 9672 G-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | ||||||| || ||| | || || ||||||||||||||||||||||| ||| Sbjct 63413 CACCGAGC-CCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACAATG 63355 Query 9731 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || || || | ||| || ||||| |||| || | || || ||||| Sbjct 63354 CAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACACCG 63295 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9850 ||||| | ||| || || | | ||||| || || |||||| || | || || Sbjct 63294 ACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCCCCA 63235 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 | | ||| |||||||| || || || || || || || || |||||||| || Sbjct 63234 GAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCATCCC 63175 Query 9911 CGTGGAATCTTGGCGCC 9927 ||| |||||||| || Sbjct 63174 TTTGGGATCTTGGCTCC 63158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583161580047160