Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1353 230 3e-55 seq3117 197 2e-45 seq1263 187 3e-42 >seq1353 Length=118606 Score = 230 bits (254), Expect = 3e-55 Identities = 582/865 (67%), Gaps = 35/865 (4%) Strand=Plus/Plus Query 59573 GTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGA 59632 ||||||| | | |||| | || ||||| || | | ||| |||||| ||| |||||| Sbjct 94841 GTACCCGCAGATCTGGGAGTTCTACAAGAAGGCCGTGGCTTCGTTCTGGACCGCCGAGGA 94900 Query 59633 GATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTACGACGAGCAGCA 59689 | | |||||| ||| ||| || | | |||||| |||||| ||||||| || Sbjct 94901 GGTGGACCTCTCCGCCGACGTGCGGCACTGGGACGCCGCGCTCAACGCGGACGAGCGCCA 94960 Query 59690 TTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATAT 59749 |||||| || || ||||||||||| ||| || || || ||| | || || | Sbjct 94961 CTTCATCTCCCACGTTCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTGCTCGAGAACCT 95020 Query 59750 AGACAT----GAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGT 59805 | | | | | | ||| || |||||| | |||||||| || ||||||||| | Sbjct 95021 GG-CGTCGCGGTTCATGTCC---GACGTCCAGGTCGCCGAGGCGCGCGCGTTCTACGGCT 95076 Query 59806 ATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTG 59864 ||| ||| || ||| |||||||| |||| ||||||||| || | || | | Sbjct 95077 TCCAGATCGC-CATTGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTAC 95135 Query 59865 GTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTT 59924 || || | ||||||| | || ||||| |||||||||||| |||||| || Sbjct 95136 ATCCGCGACGGCGCGGAGAAGGACCGGCTCTTCCGAGCCATAGAGACGGTCCCCGCCGTG 95195 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAAC 59982 | || || || ||| |||||| ||||| ||| | | |||| || || | | Sbjct 95196 CGCCGCAAGGCCGAGTGGACCATGCGCTGGATCGAGGGCGGCGAGCGC--TTCGCCGAGC 95253 Query 59983 GTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTT 60042 |||| | || || || ||||| || || ||||||||||| ||||||||||| || || | Sbjct 95254 GTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCGCCATCT 95313 Query 60043 TCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCC 60102 |||||||||| || || || |||||||| ||||| | |||||||||||||| || |||| Sbjct 95314 TCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGAGCTCATCTCCC 95373 Query 60103 GGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT-ATTGGAAAA 60160 | ||||||||||| || || || || ||| | ||||| | ||| | || Sbjct 95374 GCGACGAGGGCCTGCACTGCGACTTCGC-GTGCCTTCTCTACGACCTCCTCCGCGTCAAG 95432 Query 60161 ATG--CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGA 60217 || | ||| | | | | |||| || | | | | | || | ||| |||| Sbjct 95433 CTGGACGAGTCCCGCG---TCCGCGAGATCGTCGCCGACGCCGT-CGACATCGAGCGCGA 95488 Query 60218 GTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCA 60277 |||| || || |||||||| ||| |||| | || ||| ||| | |||| || Sbjct 95489 GTTCGTCTGCGACGCGCTTCCCTGCGCACTCGTCGGCATGAACGGCGTGCTTATGAGCCA 95548 Query 60278 GTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAAGGACCA-ATTT 60333 |||| | |||| ||||| |||||| || ||||| ||||| | | | | || | Sbjct 95549 GTACGTCGAGTTCGTCGCCGACCGCCTGCTAATGGC----TTTGGGGCACAAGAAGATGT 95604 Query 60334 ACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACT 60393 || ||| || || ||||||||||||||| |||||| || | || |||||||||| Sbjct 95605 ACAACGTCGCCAATCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGTAAGACCAACT 95664 Query 60394 TCTTTGAGAAGCGGGTCGGGGATTA 60418 |||| |||||||| ||||| || || Sbjct 95665 TCTTCGAGAAGCGCGTCGGCGAGTA 95689 >seq3117 Length=57653 Score = 197 bits (218), Expect = 2e-45 Identities = 559/840 (67%), Gaps = 29/840 (3%) Strand=Plus/Plus Query 59595 TATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTG 59654 || ||||| ||| | | || |||||| ||| ||| ||| | |||||| ||| ||| | Sbjct 28441 TACAAGAAGGCGGTGGCGTCGTTCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCG 28500 Query 59655 AAGGATTGGGACAA---GCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCC 59711 | |||||| |||||| |||||||| || |||||| || || || Sbjct 28501 CGCCACTGGGACGCCGCGCTCAACCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGCT 28560 Query 59712 TTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACAT----GAACTTTTCCAA 59767 |||||||| || || || || ||| | || || | | | | | | | ||| Sbjct 28561 TTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTGG-CGTCGCGGTTCATGTCC-- 28617 Query 59768 GGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTA 59826 || |||||| | |||||||| || | || |||| | ||| ||| || |||| | Sbjct 28618 -GACGTCCAGGTGGCCGAGGCGCGCGCCTTTTACGGCTTCCAGATCGC-CATCGAGAACA 28675 Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886 ||||||| |||| ||||||||| || | || | | || || | ||||||| Sbjct 28676 TCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAGG 28735 Query 59887 CTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 | |||||||| ||||||||||| |||||| || | || || || ||||||| Sbjct 28736 ACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCA 28795 Query 59947 TGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGT 60004 ||| ||||| ||| | | |||| || || | || ||| | || || || ||||| Sbjct 28796 TGCGCTGGATCGAGGGCGGCGAGCGC--TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGT 28853 Query 60005 GGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 || || |||||||| || || || ||||| || || ||||||||||| || || ||||| Sbjct 28854 CGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGCCT 28913 Query 60065 CATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGA 60124 |||||||||||| | ||||||||||||||| || ||||| |||||||| || || || Sbjct 28914 CATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGA 28973 Query 60125 GTTTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCA--AGGATATTCAC 60182 ||||| ||| | | || | | | | | | | || | | | | | | | Sbjct 28974 CTTTGC-GTGCCTC-CTCTACGATCTTCTCCGCGTCAAGCTCGACGAGTCGCGCGTCCGC 29031 Query 60183 AAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241 |||| || | | | | | || | ||| |||||||| || || ||||| || || Sbjct 29032 GAGATAGTCGCCGACGCCGT-CGATATAGAGCGCGAGTTCGTCTGCGACGCGCTCCCCTG 29090 Query 60242 CAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG 60301 | || | || ||| ||| | |||| |||||||| |||| ||||| ||||| Sbjct 29091 CGCGCTAGTCGGCATGAACGGCGTGCTCATGAGTCAGTACATCGAGTTCGTCGCCGACCG 29150 Query 60302 C---CTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTG 60358 | |||||||| | | | | ||| | || ||| |||| ||||| |||||||| Sbjct 29151 CCTGCTCATGGCGCTGGGT-CACAAGAA--GATGTACAACGTGGCCAACCCGTTCGACTG 29207 Query 60359 GATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||| ||||| | | || |||||||||||||| |||||||| ||||| || || Sbjct 29208 GATGGAGCTTATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 29267 >seq1263 Length=124836 Score = 187 bits (206), Expect = 3e-42 Identities = 558/842 (66%), Gaps = 33/842 (4%) Strand=Plus/Plus Query 59595 TATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTG 59654 || ||||| ||| | | || |||||| ||| ||| ||| | |||||| ||| ||| | Sbjct 19752 TACAAGAAGGCGGTGGCGTCGTTCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCG 19811 Query 59655 AAGGATTGGGACAA---GCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCC 59711 | |||||| |||||| |||||||| || |||||| || || || Sbjct 19812 CGCCACTGGGACGCCGCGCTCAACCCCGACGAGCGCCACTTCATCTCCCACGTGCTAGCT 19871 Query 59712 TTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACAT----GAACTTTTCCAA 59767 |||||||| || || || || ||| | || || | | | | | | | ||| Sbjct 19872 TTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTGG-CGTCGCGGTTCATGTCC-- 19928 Query 59768 GGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTA 59826 || |||||| | |||||||| || | || |||| | ||| ||| || |||| | Sbjct 19929 -GACGTCCAGGTGGCCGAGGCGCGCGCCTTTTACGGCTTCCAGATCGC-CATCGAGAACA 19986 Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886 ||||||| |||| ||||||||| || | || | | || || | ||||||| Sbjct 19987 TCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAGG 20046 Query 59887 CTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 | |||||||| ||||||||||| |||||| || | || || || ||||||| Sbjct 20047 ACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCA 20106 Query 59947 TGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGT 60004 ||| ||||| ||| | | |||| || || | || ||| | || || || ||||| Sbjct 20107 TGCGCTGGATCGAGGGCGGCGAGCGC--TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGT 20164 Query 60005 GGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 || || |||||||| || || || ||||| || || ||||||||||| || || ||||| Sbjct 20165 CGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGCCT 20224 Query 60065 CATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGA 60124 |||||||||||| | ||||||||||||||| || ||||| |||||||| || || || Sbjct 20225 CATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGA 20284 Query 60125 GTTTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCA--AGGATATTCAC 60182 ||||| || | | || | | | | | | | || | | | | | | | Sbjct 20285 CTTTGC-CTGCCTC-CTCTACGACCTTCTCCGCGTCAAGCTCGACGAGTCGCGCGTCCGC 20342 Query 60183 AAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241 |||| || | | | | | || | ||| |||||||| || || ||||| || || Sbjct 20343 GAGATAGTCGCCGACGCCGT-CGATATAGAGCGCGAGTTCGTCTGCGACGCGCTCCCCTG 20401 Query 60242 CAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG 60301 | || | || ||| ||| | |||| |||||||| |||| ||||| ||||| Sbjct 20402 CGCGCTAGTCGGCATGAACGGCGTGCTCATGAGTCAGTACATCGAGTTCGTCGCCGACCG 20461 Query 60302 C---CTCATGGCCCAGTTTGG--AGAAGGACCAATTTACGGCGTGAATAACCCTTTCGAC 60356 | |||||||| | | || | ||| | || ||| ||| ||||| |||||| Sbjct 20462 CCTGCTCATGGC---GCTGGGCCACAAGAA--GATGTACAACGTCGCCAACCCGTTCGAC 20516 Query 60357 TGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGAT 60416 ||||||||| ||||| | | || |||||||||||||| |||||||| ||||| || Sbjct 20517 TGGATGGAGCTTATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAG 20576 Query 60417 TA 60418 || Sbjct 20577 TA 20578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548431489074960