Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1353 107 2e-18 seq3117 100 3e-16 seq1263 100 3e-16 seq1910 93.3 5e-14 seq2639 91.5 2e-13 seq1626 91.5 2e-13 seq1536 91.5 2e-13 seq1865 89.7 6e-13 seq1785 89.7 6e-13 seq1495 89.7 6e-13 seq1368 89.7 6e-13 seq1070 89.7 6e-13 seq622 89.7 6e-13 seq2264 87.8 2e-12 seq94 84.2 2e-11 seq6754 82.4 8e-11 >seq1353 Length=118606 Score = 107 bits (118), Expect = 2e-18 Identities = 560/875 (64%), Gaps = 33/875 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||||||||| || | || |||||| ||||||| Sbjct 95689 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTCCATC 95630 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCT-CCCCAAACTGTGCCATGAG--- 74578 |||||||| || || | ||| || ||| | ||||||| ||||| || Sbjct 95629 CAGTCGAACGGATTGGCGACGTTGTACATCTTCTTGTGCCCCAAA----GCCATTAGCAG 95574 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 ||| || || || || | | |||||| |||| | | | |||||||| |||| Sbjct 95573 GCGGTCGGCGACGAACTCGACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGAGTGC 95514 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTT 74698 ||| || || || ||| || ||||| | ||| | ||| || ||| |||| Sbjct 95513 GCAGGGAAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTC 95454 Query 74699 GTGAATGTCTTTGGAAGGG--CA-CTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAA 74754 | | | | ||| | || ||| | | ||| | ||| || | |||| | | Sbjct 95453 GCGGACGCG---GGACTCGTCCAGCTTGACGCGGAGGAGGTCGTAGAGAAGGCACG-CGA 95398 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || ||| ||| || || | | || | || || || || | ||||| |||| Sbjct 95397 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCTGGCA 95338 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || || || ||||| | ||| |||||||| ||||| || || |||||||||||| | Sbjct 95337 TGAGCCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAGATGCCCT 95278 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAGTC-ATCCAAG 74931 |||| || || || |||||||| || | ||||| | || ||| | || ||||| Sbjct 95277 CGACGCAGGCGAACGCGACAAGACGCTCGGCGAA--GCGC-TCGCCGCCCTCGATCCAGC 95221 Query 74932 TCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGC 74991 | | ||| || || || || || || ||||| || || || ||| ||||||| | Sbjct 95220 GCATGGTCCACTCGGCCTTGCGGCGCACGGCGGGGACCGTCTCTATGGCTCGGAAGAGCC 95161 Query 74992 TTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAAT 75051 ||||||| || || || | | || | || || |||||| ||||||| | Sbjct 95160 GGTCCTTCTCCGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGT 95101 Query 75052 GAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACA 75110 | || ||| || ||| |||| | ||||||| | |||||||| || | ||| || Sbjct 95100 GGATGTTCTCAATG-GCGATCTGGAAGCCGTAGAACGCGCGCGCCTCGGCGACCTGGACG 95042 Query 75111 TCCTTTGA-AAAATTCATGTCG--ATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAA 75167 || || | | | | || | ||||| | ||||||||||| || |||||||| Sbjct 95041 TC---GGACATGAACCGCGACGCCAGGTTCTCGAGCACGATGCCGTCGGACGCGGCGAAG 94985 Query 75168 AAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTCCCAATCC 75224 || || || || ||| ||||||||||| || | |||| |||||| | | Sbjct 94984 AAGGCGAGAACGTGGGAGATGAAGTGGCGCTCGTCCGCGTTGAGCGCGGCGTCCCAGTGC 94925 Query 75225 TTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTG 75284 || ||| | | | || | ||||||| | |||||||| | | ||||| ||| Sbjct 94924 CGCACGTCGGCGGAGAGGTCCACCTCCTCGGCGGTCCAGAACGAAGCCACGGCCTTCTTG 94865 Query 75285 TACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 || || ||| | | ||||| ||||| || || Sbjct 94864 TAGAACTCCCAGATCTGCGGGTACTTGATCGGGAA 94830 >seq3117 Length=57653 Score = 100 bits (110), Expect = 3e-16 Identities = 272/406 (67%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || || ||||| | ||| |||||||| ||||| || || ||| Sbjct 28925 AGGCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAG 28866 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 |||||||| ||||| || || || ||||| || || | ||||| | || ||| | Sbjct 28865 AAGATGCCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAA--GCGC-TCGCCGCCC 28809 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || ||||| || || || || Sbjct 28808 TCGATCCAGCGCATGGCCCACTCGGCCTTGCGGCGCACGGCGGGGACGGTCTCTATGGCG 28749 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 |||| |||| ||||||| || || || | | || | || || |||||| Sbjct 28748 CGGAACAGGCGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTAC 28689 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| | |||| || | |||||||| || Sbjct 28688 ATCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAAAAGGCGCGCGCCTCGGC 28630 Query 75101 AATCTGTACATCCTTTGA-AAAATTCATGTCG--ATATTCTCCATGACGATGCCGTCCGA 75157 | ||| || || || | | | | || | ||||| | || |||||||| || Sbjct 28629 CACCTGGACGTC---GGACATGAACCGCGACGCCAGGTTCTCGAGCACTATGCCGTCGGA 28573 Query 75158 GGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||||||| ||||| || || ||| ||||||||||| ||| Sbjct 28572 GGCGGCGAAGAAAGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCG 28527 >seq1263 Length=124836 Score = 100 bits (110), Expect = 3e-16 Identities = 272/406 (67%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || || ||||| | ||| |||||||| ||||| || || ||| Sbjct 20236 AGGCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAG 20177 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 |||||||| ||||| || || || ||||| || || | ||||| | || ||| | Sbjct 20176 AAGATGCCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAA--GCGC-TCGCCGCCC 20120 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || ||||| || || || || Sbjct 20119 TCGATCCAGCGCATGGCCCACTCGGCCTTGCGGCGCACGGCGGGGACGGTCTCTATGGCG 20060 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 |||| |||| ||||||| || || || | | || | || || |||||| Sbjct 20059 CGGAACAGGCGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTAC 20000 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| | |||| || | |||||||| || Sbjct 19999 ATCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAAAAGGCGCGCGCCTCGGC 19941 Query 75101 AATCTGTACATCCTTTGA-AAAATTCATGTCG--ATATTCTCCATGACGATGCCGTCCGA 75157 | ||| || || || | | | | || | ||||| | || |||||||| || Sbjct 19940 CACCTGGACGTC---GGACATGAACCGCGACGCCAGGTTCTCGAGCACTATGCCGTCGGA 19884 Query 75158 GGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||||||| ||||| || || ||| ||||||||||| ||| Sbjct 19883 GGCGGCGAAGAAAGCTAGCACGTGGGAGATGAAGTGGCGCTCGTCG 19838 >seq1910 Length=89990 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 14243 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 14302 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 14303 TGAGCTACGAAAGCAA 14318 >seq2639 Length=69745 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 8616 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8557 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 8556 TGAGCTACGAAAGCA 8542 >seq1626 Length=101504 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678 |||| |||||||| |||| | || |||| ||||||||||||||||||||||||||| | Sbjct 21274 CAGA-TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 21216 Query 79679 CCAATTGAGCTACGAAAGCAAA 79700 |||| |||||||||||||| || Sbjct 21215 CCAACTGAGCTACGAAAGCTAA 21194 >seq1536 Length=105443 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 21484 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 21425 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||||||| || Sbjct 21424 TGAGCTACGAAAGCTAA 21408 >seq1865 Length=90581 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 51138 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 51197 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 51198 TGAGCTACGAAAGC 51211 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 62890 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 62949 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 62950 TGAGCTACGAAAGC 62963 >seq1785 Length=95246 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 68057 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 67998 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 67997 TGAGCTACGAAAGC 67984 >seq1495 Length=107312 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 61041 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 60982 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 60981 TGAGCTACGAAAGC 60968 >seq1368 Length=114371 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 10857 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10798 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 10797 TGAGCTACGAAAGC 10784 >seq1070 Length=133308 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 23993 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24052 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 24053 TGAGCTACGAAAGC 24066 >seq622 Length=171327 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 105698 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 105757 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 105758 TGAGCTACGAAAGC 105771 >seq2264 Length=78313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/96 (82%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | |||||| ||||||||||||||| ||||||||||| ||||| Sbjct 24354 TGCTTTCGTTGAGTCT--ATCTCAAGACCTCCCGCTTACTACACGGGTGCTCTAACCAAC 24297 Query 79684 TGAGCTACGAAAGCAAAAGGGGAACTCTGACCTGGC 79719 |||||||||||||| | || ||| || ||||||| Sbjct 24296 TGAGCTACGAAAGCTACAGTTGAAATC--ACCTGGC 24263 >seq94 Length=343798 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||||||| |||| | || |||| | ||||||||||||||||||||||||| || | Sbjct 294476 ACTGCTTTCGTTGAGAGTGGAACTCAAGAGCTCCCGCTTACTAAACGGGTGCTCTAACAA 294417 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||||||| Sbjct 294416 ACTGAGCTACGAAAGC 294401 >seq6754 Length=16022 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1452 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 1511 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 1512 CTGAGCTACGAGAGC 1526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547122911718200