Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq990 122 8e-23 seq212 122 8e-23 seq8345 109 5e-19 seq559 98.7 9e-16 seq463 95.1 1e-14 seq8279 93.3 4e-14 seq3496 93.3 4e-14 >seq990 Length=138715 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || ||||| || || | || Sbjct 23998 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCTCG 23939 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || ||||| || || ||||| Sbjct 23938 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 23879 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| ||| |||| ||| | ||| || | || |||||| Sbjct 23878 CAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGACGGCCGCACCCTTGCTGACTACAAC 23819 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| || | | |||||||||| Sbjct 23818 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTGAGGCTCAGGGGTGGCAT 23769 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || | |||||||| | || Sbjct 23314 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACCTTAGAAGTGGAGTCTTCG 23255 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || ||||| || || || || Sbjct 23254 GACACCATTGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 23195 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| || | ||| | | || |||||| Sbjct 23194 CAGCGTCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 23135 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| ||||| || ||| | || ||||| | ||| | || |||||| Sbjct 23134 ATTCAGAAGGAATCTACCCTCCACTTGGTGCTTCGTCTCCGTGGTGGC 23087 >seq212 Length=258318 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || ||||| || || | || Sbjct 17586 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCTCG 17527 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || ||||| || || ||||| Sbjct 17526 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 17467 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| ||| |||| ||| | ||| || | || |||||| Sbjct 17466 CAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGACGGCCGCACCCTTGCTGACTACAAC 17407 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| || | | |||||||||| Sbjct 17406 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTGAGGCTCAGGGGTGGCAT 17357 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || | || ||||| | || Sbjct 16902 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACCTTAGAGGTGGAGTCTTCG 16843 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || |||||||| || ||||| || || || || Sbjct 16842 GACACCATTGATAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAG 16783 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| || | ||| | | || |||||| Sbjct 16782 CAGCGTCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 16723 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| ||||| || ||| | || ||||| | || | || |||||| Sbjct 16722 ATTCAGAAGGAATCCACCCTCCACTTGGTGCTTCGCCTCCGTGGTGGC 16675 >seq8345 Length=7904 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | || || ||||| ||||| | || Sbjct 7715 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 7656 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 7655 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 7596 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || | || || | || || | ||||||||| Sbjct 7595 CAGAGGCTTATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACACTTGCTGATTACAAC 7536 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || |||| | ||| | |||||||||| Sbjct 7535 ATACAGAAGGAGTCTACCCTCCACCTGGTGCTCCGTCTCAGGGGTGGCAT 7486 >seq559 Length=180664 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| | || Sbjct 32126 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATCACGCTGGAGGTGGAGTCCTCG 32185 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 32186 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 32245 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | || | |||| |||||| Sbjct 32246 CAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTACAAC 32305 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | || |||| Sbjct 32306 ATCCAGAAGGAGTCGACCCTGCACCTGGT 32334 >seq463 Length=196461 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || || || |||||| | || || | || || || || Sbjct 42770 ATGCAGATATTTGTGAAGACCCTTACAGGCAAGACAATAACATTGGAGGTTGAGAGCTCT 42829 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| ||||| |||||||| ||||| || || || || Sbjct 42830 GACACTATTGACAATGTCAAGGCAAAGATTCAGGACAAAGAGGGCATCCCCCCGGACCAG 42889 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || | |||||| | || | | || |||||| Sbjct 42890 CAGAGGCTCATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGCACACTGGCAGACTACAAC 42949 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || | || | ||| | |||||||||| Sbjct 42950 ATCCAGAAGGAGTCTACCCTTCACCTTGTCCTTCGTCTTAGGGGTGGCAT 42999 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| || || ||| ||||||||||||| || || || Sbjct 42997 CATGCAGATCTTTGTGAAGACTCTCACTGGAAAGACTATTACTCTTGAGGTTGAGAGCTC 43056 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || ||| || || ||||| |||||||| ||||| || || Sbjct 43057 AGACACAATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATCCCACCAGACCA 43116 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || || || ||| | || || | || | | |||||||| Sbjct 43117 GCAGCGACTCATCTTTGCTGGGAAGCAACTCGAGGATGGGCGCACATTGGCTGATTACAA 43176 Query 27167 CATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 43177 TATCCAGAAGGAGTCTAC 43194 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| |||||| | || || || || ||||| || Sbjct 43226 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACGCTAGAGGTGGAGAGCTCG 43285 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||| | | || || || || || ||||| ||||| || || || ||||| Sbjct 43286 GACACCATTCATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 43345 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || || | || || | ||| | | ||||||||| Sbjct 43346 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGGCGTACCTTGGCAGATTACAAC 43405 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||| || || | ||| | || |||| || || ||||||| Sbjct 43406 ATCCAGAAGGAATCCACTCTTCATCTTGTCCTGCGCTTACGCGGTGGCA 43454 >seq8279 Length=8219 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| |||||| | || || || || ||||| || Sbjct 6961 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACGCTAGAGGTGGAGAGCTCG 7020 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| ||||| || || || ||||| Sbjct 7021 GACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 7080 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || || | || || | ||| | | ||||||||| Sbjct 7081 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGGCGTACCTTGGCAGATTACAAC 7140 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||| || || | ||| | || |||| || || ||||||| Sbjct 7141 ATCCAGAAGGAATCCACTCTTCATCTTGTCCTGCGCTTACGCGGTGGCA 7189 >seq3496 Length=52490 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| | || Sbjct 27400 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATCACGCTGGAGGTGGAGTCCTCG 27341 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 27340 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 27281 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||| || || |||| ||| | || | |||| |||||| Sbjct 27280 CAGCGGCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTACAAC 27221 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | || |||| Sbjct 27220 ATCCAGAAGGAGTCGACCCTGCACCTGGT 27192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434844414943680