Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq691 253 2e-62 seq2365 226 3e-54 seq7208 201 1e-46 seq160 116 4e-21 >seq691 Length=167025 Score = 253 bits (280), Expect = 2e-62 Identities = 348/485 (72%), Gaps = 1/485 (0%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || |||||||| | || | ||||| || ||||||||| | || | Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 || ||| |||| ||||||||||| || ||||| || | | | |||| | Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || |||||| | || || |||||||| |||||||| ||| | |||| |||||| | ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | || ||| ||| || | | ||| ||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATG 130945 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | |||||||||| || | | || || |||| ||||||||| ||||||||| Sbjct 130944 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 130885 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | | || | ||||||||||| | Sbjct 130884 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 130825 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 ||||||||||||||| || | || || || ||||| |||||||||||| |||||||| | Sbjct 130824 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 130765 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 | |||||||||||| || ||||| ||||| || ||| | || ||||| ||||| |||| Sbjct 130764 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTGGT 130705 Query 176686 GGATC 176690 | ||| Sbjct 130704 GCATC 130700 >seq2365 Length=77851 Score = 226 bits (250), Expect = 3e-54 Identities = 310/434 (71%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 176239 GATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAACATCATC 176298 ||||| || ||||||| ||| || | || ||| |||| ||||||||||| || ||| Sbjct 13461 GATATTGATGGTATTCACGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATC 13520 Query 176299 TCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAA 176358 || || || | | |||| ||| || | || || |||||||| |||| Sbjct 13521 TCTGGTGCCATTTTTCCAA-CTC-----------GATTGCATTTTTACCCAATTCAGGAA 13568 Query 176359 GCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCAC 176418 || ||| | |||| |||||| | |||||||| || || || | || |||| | ||| Sbjct 13569 GCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAC 13628 Query 176419 TTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGC 176478 ||| | | ||| | | ||| ||||| || | |||||||||| || | | || || Sbjct 13629 TTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGT 13688 Query 176479 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTC 176538 |||| ||||||||| ||||||| | || || || || || || || | || |||||| Sbjct 13689 ATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTC 13748 Query 176539 CTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGT 176598 | | || || | ||||||||| ||||||||||||||||||| | || || || ||| Sbjct 13749 TTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGT 13808 Query 176599 ACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCAT 176658 || |||||||||||| |||||||| | | |||||||||||| || ||||| ||||| || Sbjct 13809 ACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCAC 13868 Query 176659 ATGCTTGGAGTAGC 176672 ||| | || ||||| Sbjct 13869 ATGTTAGGTGTAGC 13882 >seq7208 Length=13341 Score = 201 bits (222), Expect = 1e-46 Identities = 386/564 (68%), Gaps = 4/564 (1%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| | | ||||||||||| | ||||| || | | ||||| | | ||| Sbjct 1710 TTTACATCCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACCTC-TGTA 1768 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || ||||| || || || ||||| || ||||||| || || || Sbjct 1769 TTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTT 1828 Query 176266 GCAGGATCTCTACTCTATGGAAA-CAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAA 176324 || ||| || | ||| |||| ||| || ||||| || || | | || || Sbjct 1829 TTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGC 1888 Query 176325 CGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTA 176384 || ||| || | || || |||||| | || ||||| ||| ||||| |||||| | || Sbjct 1889 AGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATA 1948 Query 176385 CAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACAT 176444 |||||| || || | | || |||| | |||||| | | ||| | | ||| || Sbjct 1949 CAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATAT 2008 Query 176445 GGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATA 176504 ||| || ||||||||||||||| | | || | |||||||||||| |||| | || Sbjct 2009 GGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTA 2068 Query 176505 CTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATC 176564 || | || || | || || | || ||||| | |||| || ||||||||| Sbjct 2069 TTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAG 2128 Query 176565 TTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCA 176624 ||| ||| |||||||| || | || || || ||||| |||||||||||| ||||||||| Sbjct 2129 TTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCA 2188 Query 176625 AGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGG 176684 ||| |||||||||| || | ||| ||||| || || | || ||||| ||||| || || Sbjct 2189 GGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGG 2248 Query 176685 TGGATCTCTTTTCTCAGCAATGCA 176708 || || || ||| || ||||| Sbjct 2249 CGGTTC-CTATTCAATGCTATGCA 2271 >seq160 Length=286096 Score = 116 bits (128), Expect = 4e-21 Identities = 154/213 (72%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 176819 ACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTC 176878 ||||||| |||||||| | |||||||| |||||| |||||| ||||| | | | | Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 176879 ACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCA 176938 ||||||| || || | || || || | |||||||| ||||| | ||| || | | Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 176939 CAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTA 176998 | |||||||||||||| || |||||||| |||||||| ||||| | || | | ||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 255305 Query 176999 AAGTGATTCCTACATGGGGAGATATCCTTAACC 177031 || ||| ||| |||| |||||| | |||| Sbjct 255306 GCGTTATTAATACTTGGGCTGATATCATCAACC 255338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603391738058880