Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq6975 242 5e-59 seq2365 203 4e-47 seq691 203 4e-47 seq7200 145 1e-29 seq9384 127 3e-24 seq160 114 2e-20 seq5081 107 2e-18 seq6053 96.9 4e-15 seq5712 96.9 4e-15 >seq6975 Length=14722 Score = 242 bits (268), Expect = 5e-59 Identities = 590/888 (66%), Gaps = 28/888 (3%) Strand=Plus/Minus Query 184724 TTTCTT-GGAGCACATTTTGTATGGGCATTCAGTTTGATGTTCCTATGGAGTGGTAGAGG 184782 |||||| || | |||||||| ||||| |||||||| ||||| ||| ||||| | || Sbjct 4685 TTTCTTAGGCACTCATTTTGTCTGGGCTTTCAGTTTAATGTTTTTATTTAGTGGCCGTGG 4626 Query 184783 ATACTGGCAAGAGTTGATAGAGTCTATTGCTTGGGCACATAACAAATTAAAACTTGCACC 184842 || |||||||| | || || ||||| | |||||| ||||||||||| ||| |||| || Sbjct 4625 TTATTGGCAAGAACTTATTGAATCTATCGTTTGGGCTCATAACAAATTCAAAGTTGCTCC 4566 Query 184843 TACCATTCAACCAAGAGCAATGTCAATTACACAAGGACGTGCTGTTGGAGTTGCACACTT 184902 | | | ||| || ||||| || |||| ||||||||||||||| ||||| | || | Sbjct 4565 TGCTACTCAGCCTAGAGCCTTGAACATTATACAAGGACGTGCTGTAGGAGTAACCCATTA 4506 Query 184903 CTTACTTGGAGGTATTGCCACAACATGGGCATTCTTCTTTGCTCACCTTATCCCCTTAAG 184962 | | | || || |||||||||||||||||||||||||| || |||| | || | Sbjct 4505 CCTTTTGGGTGGAATTGCCACAACATGGGCATTCTTCTTAGCGAGAATTATTGCAATAGG 4446 Query 184963 TTA-----------AAT---CATGGC--TACTAAAACAAAATTTCCAAAATTTAATCAAG 185006 || || | ||| || || || |||||| | |||| |||| Sbjct 4445 ATAGTGGCTAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCTAGGTTTAGCCAAG 4386 Query 185007 ATTTGGCAAGTGATCCTACAACTAGGAGATTGTGGTATGGATTAGCAACTGCACATGACT 185066 || | || || || ||| | | | |||| ||| | || || |||||||| | Sbjct 4385 GCTTAACTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGATT 4326 Query 185067 TTGAGAGTCATGACAATATGACAGAAGAGAAGTTATATCAAAAATTATTTGCTACACACT 185126 |||| | |||||| |||| || || || | | ||||| || | |||||| | |||| Sbjct 4325 TTGAAAATCATGATGATATTACTGAGGAACATCTTTATCAGAACATTTTTGCTTCTCACT 4266 Query 185127 TTGGTCATCTTGCAATTATCTTTCTATGGGTTGCAGGTAATTTAATTCATATAGCATGGC 185186 |||| || | ||||| |||||||||||| | || ||| | ||||| |||| |||| Sbjct 4265 TTGGGCAGTTAGCAATAATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTAGCTTGGC 4206 Query 185187 AAGGTAACTTTGAACAGTTTGTAGCAGACCCACAACATGTGATACCTATAGCACATAGAA 185246 |||| || |||||| || || || || ||| || | |||||| || ||| || Sbjct 4205 AAGGAAATTTTGAATCGTGGATACAGGATCCTTTACACGTAAGACCTATTGCTCATGCAA 4146 Query 185247 TATGGGATCCTCA-----TTTTGGTCAAGGTGCAACAGATGCATACACACAGGCAGGTTC 185301 | ||||||||||| |||||||||| || || || | || | |||| | Sbjct 4145 TTTGGGATCCTCATTTTGTTTTGGTCAACCCGCCGTGGAAGCTTTTACTCGAAGAGGTGC 4086 Query 185302 TACTTTTCCTGTGAACAGATTG--TATTCTGGACTGTATCATTGGTGGTACACAGTTGGT 185359 | | ||| |||| | |||| |||| ||| | ||||| |||||||| ||| |||| Sbjct 4085 TGCGGGTCCAGTGA--ATATTGCCTATTTTGGGGTTTATCAGTGGTGGTATACAATTGGA 4028 Query 185360 ATGAGAACTAATATGCAACTGTATACTGGTGGTGCATTTATGATTCTACTAGCATTGGTA 185419 || | || ||| | || |||||||| | | ||| | | | || | | || Sbjct 4027 TTGCGCACCAATGAAGATCTTTATACTGGAGCTCTTTTTCTATTATTTCTTTCTACGCTA 3968 Query 185420 TCTTTACTTGGTGCTCAATTACATCTGAAACCAAAGTTTGCACCTAAG-CTTGCTTGGTT 185478 || ||| | || | | |||||||| |||| || | | | | ||| ||| | |||| Sbjct 3967 TCCTTAATGGGAGGTTGGTTACATCTACAACCCAA-ATGGAAGCCAAGCCTTTCGAGGTT 3909 Query 185479 TAAAGATAATGAGAACAGATTAAATCATCATCTATCAGTTCTATTTGGATTCAGTTCTAT 185538 ||| | || | | ||||||||||| |||| || || || | |||||| | Sbjct 3908 CAAAAACGCGGAATCTCGTCTCAATCATCATCTGTCAGGACTTTTCGGGGTAAGTTCTTT 3849 Query 185539 TGCATGGGCTGGTCATTTGATACACGTAGCAATACCTGCATCAAGAGG 185586 || ||| | || |||||| | || || || | |||| ||| || || Sbjct 3848 GGCTTGGACAGGACATTTGGTTCATGTTGCTAATCCTGGATCCAGGGG 3801 >seq2365 Length=77851 Score = 203 bits (224), Expect = 4e-47 Identities = 306/436 (70%), Gaps = 12/436 (3%) Strand=Plus/Plus Query 189789 TAGACATTGATGGCATCAGAGAGCCAGTTGCAGGTTCACTTCTCTATGGTAACAACATCA 189848 |||| |||||||| || ||||| || ||||| | || ||||| ||||| || | Sbjct 13459 TAGATATTGATGGTATTCACGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTA 13518 Query 189849 TTTCTGGTGCTGTTGTACCTTCATCAAATGCTATTGGTCTACACTTCTACCCAATCTGGG 189908 | |||||||| || | || || | |||| || || |||||||| || Sbjct 13519 TCTCTGGTGCCATTTTTCC-------AACTCGATTG-----CATTTTTACCCAATTCAGG 13566 Query 189909 AAGCAGCAACAGTAGATGAGTGGCTTTACAATGGTGGTCCTTACCAGTTGGTAATCTTCC 189968 |||| ||| | | ||||| ||| | ||||||||||||||||| || | | | | | Sbjct 13567 AAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTAC 13626 Query 189969 ACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAATTATCATACAGACTAG 190028 ||||| | ||||| | | || ||||| | |||||||| | | | | || | Sbjct 13627 ACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGG 13686 Query 190029 GTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTAT 190088 ||||| |||||||| |||||| ||||||| || || || || || ||| || | Sbjct 13687 GTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTT 13746 Query 190089 TCCTTGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTCAG 190148 || | | ||||| ||||||| || ||||||||||||||||||||||| ||||| | Sbjct 13747 TCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTG 13806 Query 190149 GTACATTCAACTTCATGTTTGTATTCCAAGCAGAACATAATATCCTTATGCACCCATTCC 190208 |||| |||||||| ||| |||||||| | | ||| || || ||||||||||| ||||| | Sbjct 13807 GTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTC 13866 Query 190209 ATATGGCAGGTGTAGC 190224 | ||| ||||||||| Sbjct 13867 ACATGTTAGGTGTAGC 13882 >seq691 Length=167025 Score = 203 bits (224), Expect = 4e-47 Identities = 323/462 (70%), Gaps = 1/462 (0%) Strand=Plus/Minus Query 189767 GCATTTATTGCAGCACCACCTGTAGACATTGATGGCATCAGAGAGCCAGTTGCAGGTTCA 189826 || || |||||||| | || |||| |||||||| || | |||| || ||||| Sbjct 131174 GCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTTCT 131115 Query 189827 CTTCTCTATGGTAACAACATCATTTCTGGTGCTGTTGTACCTTCATCAAATGCTATTGGT 189886 | || ||||| ||||| || || ||||||| || | || | | || || || Sbjct 131114 TTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCGGA 131055 Query 189887 CTACACTTCTACCCAATCTGGGAAGCAGCAACAGTAGATGAGTGGCTTTACAATGGTGGT 189946 | || || |||||||| |||||||| ||| | | ||||| ||| | |||||||||||| Sbjct 131054 TTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 130995 Query 189947 CCTTACCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAG 190006 ||||| || | | | | || ||| ||| | || | | || ||||| | || Sbjct 130994 CCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATGGGTCGTGAG 130936 Query 190007 TGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCA 190066 |||||| | | | | || |||||| |||||||| |||||| |||||||| || Sbjct 130935 TGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCT 130876 Query 190067 GTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCATTCTCTGAT 190126 || | || || ||| || ||| | | ||| | | ||||| || ||||||||| Sbjct 130875 GTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTCTGAT 130816 Query 190127 GGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTTTGTATTCCAAGCAGAACAT 190186 |||||| ||||||| ||||| ||||| |||||||| ||| |||||||| | | ||| || Sbjct 130815 GGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCAC 130756 Query 190187 AATATCCTTATGCACCCATTCCATATGGCAGGTGTAGCAGGT 190228 || ||||||||||| ||||| || ||| ||||||||| ||| Sbjct 130755 AACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 130714 >seq7200 Length=13423 Score = 145 bits (160), Expect = 1e-29 Identities = 207/290 (71%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 183935 TTATTCACCCATCATATGTGGATAGGTGGTTTTCTTATTGTGGGTGCATCAGCACATGCT 183994 || ||||| || || |||||||| || || ||||| || || ||||| | |||||||| Sbjct 7957 TTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTTGGTGCTGCTGCACATGCA 8016 Query 183995 TCAATTGCTATGATAAGAGACTATAATCC---TGTTCAACATATGGGAAATGTATTAGAT 184051 | ||| |||||||||||||||| |||| | || | | | | || |||||||| Sbjct 8017 GCCATTTTTATGATAAGAGACTATGATCCAACTACTCGATACAATG---ATCTATTAGAT 8073 Query 184052 AGAATACTTAAATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTATGCATCTTTTTA 184111 | | |||| | | ||||||||||| ||| | ||||||||||| || ||| || Sbjct 8074 CGCGTCCTTAGACACCGCGATGCAATCATATCCCACCTTAACTGGGTATGTATATTTCTA 8133 Query 184112 GGTTTTCATAGTTTTGGTCTTTATATTCACAATGATATTATGAGAGCATTGGGTAGACCT 184171 ||||||| |||||||| | || ||||| ||||||| ||||| || || | | || Sbjct 8134 TGTTTTCACAGTTTTGGCTTGTACATTCATAATGATAACATGAGTGCTTTAGACCGTCCC 8193 Query 184172 AATGATCTATTCAGTGATACAGCAATACAATTACAACCTGTATTTGCACA 184221 | ||| | || ||||| || |||||||||||||| | ||||| || Sbjct 8194 CAAGATATGTTTTCGGATACCGCCATACAATTACAACCCATCTTTGCTCA 8243 >seq9384 Length=4288 Score = 127 bits (140), Expect = 3e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 186971 ATTTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAGACTCTTGCTTGGGCACATCAAAGA 187030 ||||| ||| | || |||||||| || |||||||||||| | || ||||| ||| || | Sbjct 1 ATTTCCTGGCGTGGATATTGGCAGGAATTAATTGAGACTTTAGCATGGGCTCATGAACGC 60 Query 187031 ACTCCAATAGCAAATATAGCAGGTTGGAGAGATAAACCAGTGGCACTTTCTATTGTTCAA 187090 || || | || ||| || | ||||||||||| || ||||| ||||| ||||| ||| Sbjct 61 ACACCTTTGGCTAATTTAATTCGCTGGAGAGATAAGCCCGTGGCTCTTTCCATTGTGCAA 120 Query 187091 GCAAGACTAGTTGGTTTATCACATTTTGCCATAGGATTTGTGCTTACCTATGCACCATTC 187150 |||||| ||||||| ||| | || ||| || | || | | | | || |||||| | ||| Sbjct 121 GCAAGATTAGTTGGATTAGCCCACTTTTCCGTGGGTTATATATTCACTTATGCAGCTTTC 180 Query 187151 CTGATAGCAACAACAGCA 187168 |||| || ||||| || Sbjct 181 TTGATTGCCTCAACATCA 198 >seq160 Length=286096 Score = 114 bits (126), Expect = 2e-20 Identities = 132/177 (75%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 190373 GGTTACTTTGGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTTACAC 190432 ||||| |||||| || | |||||||| |||||| ||||||||||| | ||||||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 190433 TTCTTCTTAGCAGTATTCCCTGTAACCTGTGTATGGTTAACATCAATGGGTATTTGCACA 190492 ||||| || | | |||||| | | ||||| || | | |||||| | || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 190493 ATGGCATTCAACTTAAATGGTTTCAACTTTAACCAGTCTGTAGTTGATGCACAAGGT 190549 |||||||||||| ||||||||||||| || ||||| |||||||||||| |||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGT 255304 >seq5081 Length=29715 Score = 107 bits (118), Expect = 2e-18 Identities = 162/231 (70%), Gaps = 11/231 (5%) Strand=Plus/Plus Query 188637 ACCTGTCACAGTTCAGTATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGGGAG 188696 |||| | ||| |||| || ||||||||||||| ||| | |||||| | | | ||| | Sbjct 29494 ACCTATAACAATTCACTACCCTTATGAAAAATCAATTACATCAGAGCGTTTCTGTGGGCG 29553 Query 188697 GATACACTATGAGTTTGATAAATGTATTGCTTGTGAAGTATGTGTAAGAGTTTGTCCTAT 188756 ||||||| ||| |||||||||||||||||||||||| |||| ||||| || Sbjct 29554 AATACACTTTGAATTTGATAAATGTATTGCTTGTGAA-----TGTA------TGTCCGAT 29602 Query 188757 TAATTTACCTGTAGTTGATTGGGTAATGAATAAACAAACTAAGAAGAAGGAACTTAGAAA 188816 || |||| | || |||||| | | | || | | ||| ||||| || | || Sbjct 29603 AGATCTACCCCTTGTGGATTGGAGATTTGAAAAGGATATTAAAAAGAAACAATTGCTTAA 29662 Query 188817 TTATTCAATTGACTTTGGTGCTTGCATTTTCTGTGGGAATTGTGTAGAATA 188867 |||| ||||| || || | ||| || || ||||| || ||||| ||||| Sbjct 29663 TTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGTAACTGTGTTGAATA 29713 >seq6053 Length=21187 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 184824 ACAAATTAAAACTTGCACCTACCATTCAACCAAGAGCAATGTCAATTACACAAGGACGTG 184883 ||||||| ||| |||| ||| | | ||| || ||||| || |||| |||| |||||| Sbjct 4588 ACAAATTCAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAAGACGTG 4529 Query 184884 CTGTTGGAGTTGCACACTTCTTACTTGGAGGTATTGCCACAACATGGGCATTCTTCTTTG 184943 |||| ||||| | || | | | || || || |||||||||||||||||||||||||| | Sbjct 4528 CTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCATTCTTCTTAG 4469 Query 184944 C 184944 | Sbjct 4468 C 4468 >seq5712 Length=24054 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 184824 ACAAATTAAAACTTGCACCTACCATTCAACCAAGAGCAATGTCAATTACACAAGGACGTG 184883 ||||||| ||| |||| ||| | | ||| || ||||| || |||| |||| |||||| Sbjct 4560 ACAAATTCAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAAGACGTG 4501 Query 184884 CTGTTGGAGTTGCACACTTCTTACTTGGAGGTATTGCCACAACATGGGCATTCTTCTTTG 184943 |||| ||||| | || | | | || || || |||||||||||||||||||||||||| | Sbjct 4500 CTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCATTCTTCTTGG 4441 Query 184944 C 184944 | Sbjct 4440 C 4440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631319786340440