Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4941 104 2e-17 seq5045 95.1 8e-15 seq2370 89.7 3e-13 seq8279 84.2 1e-11 seq463 84.2 1e-11 >seq4941 Length=31460 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || ||||| ||||| ||||| ||| || Sbjct 20688 ATGCAGATTTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 20629 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || || || || Sbjct 20628 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 20569 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || |||| ||||| | | || |||||| Sbjct 20568 CAGCGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGCACACTTGCTGACTACAAC 20509 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 20508 ATCCAGAAGGAGTCCAC 20492 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||||||||| || ||||| || || || || || | Sbjct 20460 ATGCAGATCTTCGTGAAGACCCTCACGGGAAAGACCATCACGCTGGAGGTCGAGTCATCT 20401 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | ||||| ||||| || || | || ||||| || Sbjct 20400 GACACCATCGACAATGTGAAGGC-CAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCA 20342 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| || || || || | ||||| | | ||| ||||| Sbjct 20341 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAA 20282 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 20281 CATCCAGAAGGAGTCCAC 20264 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || |||||| | || ||||| || | Sbjct 19967 ATGCAGATTTTTGTCAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGTCATCT 19908 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| || ||||| || || | ||||| || || Sbjct 19907 GACACGATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 19848 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || ||||| || | || || | | || |||||| Sbjct 19847 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCGCTGACTACAAC 19788 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 19787 ATCCAGAAGGAGTCCAC 19771 >seq5045 Length=31214 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || |||||| | || ||||| || | Sbjct 21086 ATGCAGATTTTTGTCAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGTCATCT 21027 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || ||||| || Sbjct 21026 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 20967 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || || | ||||| | | ||| |||||| Sbjct 20966 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAAC 20907 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 20906 ATCCAGAAGGAGTCCAC 20890 >seq2370 Length=76838 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| |||||||| || || || ||||| || || || || || | Sbjct 12346 ATGCAGATTTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCTTCT 12405 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| |||||| | || || || || Sbjct 12406 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCGGACCAG 12465 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || ||||| || || || |||| ||||| | | || |||||| Sbjct 12466 CAGAGGCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGGCGCACCCTTGCTGACTACAAC 12525 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 12526 ATCCAGAAGGAGTCCAC 12542 >seq8279 Length=8219 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||||||||| ||||| | || Sbjct 6083 ATGCAGATATTCGTCAAGACACTGACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCG 6142 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 | ||| | || ||| |||| | || ||| || || || ||| | || || || || Sbjct 6143 GGCACGATCGACAATGTTAAGGC-CAAGATTCAGGATAAGGAGGGTATCCCCCCGGACCA 6201 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || ||||| | || || || | |||||||| Sbjct 6202 GCAGAGGCTCATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGTACATTGGCTGATTACAA 6261 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 6262 CATCCAGAAGGAGTCGAC 6279 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || |||||||| || || || || | || Sbjct 6961 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACGCTAGAGGTGGAGAGCTCG 7020 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || |||||||| Sbjct 7021 GACACCATTGATAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGAATTCCTCCAGATCA 7079 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || || || | || || || | |||||||| Sbjct 7080 GCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGGCGTACCTTGGCAGATTACAA 7139 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 7140 CATCCAGAAGGAATCCAC 7157 >seq463 Length=196461 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||||||||| ||||| | || Sbjct 42314 ATGCAGATATTCGTCAAGACACTGACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCG 42373 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | | ||| |||| | || ||| || || || ||| | || || || || Sbjct 42374 GACACGATCAACAATGTTAAGGC-CAAGATTCAGGATAAGGAGGGTATCCCCCCGGACCA 42432 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || ||||| | || || || | |||||||| Sbjct 42433 GCAGAGGCTCATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGTACATTGGCTGATTACAA 42492 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 42493 CATCCAGAAGGAGTCGAC 42510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337953537833372