Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8286 105 9e-18 seq6533 105 9e-18 seq4598 105 9e-18 seq446 102 1e-16 >seq8286 Length=8159 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| |||| | ||||| |||| ||| || Sbjct 971 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 912 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || |||||||||||||| ||||||||| ||| | || |||||||| || || Sbjct 911 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTGGCTCGAATATTGTGAACTGAA 852 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || |||| ||||| ||||| Sbjct 851 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGATT 792 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| || || |||||||| Sbjct 791 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 751 Score = 104 bits (114), Expect = 3e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || || || ||||| |||||||| | ||| | |||| Sbjct 649 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 590 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC--CCATTGATGAATTCCTACCGCTACACGCATC 78515 |||||||| || || ||||| ||||| |||| ||| || || || | || | ||| Sbjct 589 GTATGTTTGGATGGCAGATTCAATGTCATCCAT--ATGTATCCCCACTGAAACTCTCATT 532 Query 78516 AACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 78575 ||||| ||||| ||||||||||| |||| | | || || | ||| || | || Sbjct 531 AACATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCG 472 Query 78576 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | |||||| || ||||| |||| || |||||| || ||||||||||| Sbjct 471 AGAGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 422 >seq6533 Length=17200 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| |||| | ||||| |||| ||| || Sbjct 972 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 913 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || |||||||||||||| ||||||||| ||| | || |||||||| || || Sbjct 912 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAACTGAA 853 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || |||| ||||| ||||| Sbjct 852 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGATT 793 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| || || |||||||| Sbjct 792 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 752 Score = 104 bits (114), Expect = 3e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || || || ||||| |||||||| | ||| | |||| Sbjct 650 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 591 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC--CCATTGATGAATTCCTACCGCTACACGCATC 78515 |||||||| || || ||||| ||||| |||| ||| || || || | || | ||| Sbjct 590 GTATGTTTGGATGGCAGATTCAATGTCATCCAT--ATGTATCCCCACTGAAACTCTCATT 533 Query 78516 AACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 78575 ||||| ||||| ||||||||||| |||| | | || || | ||| || | || Sbjct 532 AACATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCG 473 Query 78576 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | |||||| || ||||| |||| || |||||| || ||||||||||| Sbjct 472 AGAGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 423 >seq4598 Length=35162 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| |||| | ||||| |||| ||| || Sbjct 34310 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 34369 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || |||||||||||||| ||||||||| ||| | || |||||||| || || Sbjct 34370 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAACTGAA 34429 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || |||| ||||| ||||| Sbjct 34430 ACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGATT 34489 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| || || |||||||| Sbjct 34490 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 34530 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || || || ||||| |||||||| | ||| | |||| Sbjct 34632 AGTACCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 34691 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| || || ||||| ||||| | ||| || || || || | || | ||| | Sbjct 34692 GTATGTTTTGATGGCAGATTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTA 34750 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 |||| || || |||||||| || ||| | | ||||| | ||| || | |||| Sbjct 34751 ACATGTGTTGTGGTCTTTCGACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 34810 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||| || || ||||| |||| || ||||| || ||||||||||| Sbjct 34811 GAGTCTTGAACCCAAAGTAGTCATAATCGAAGTCCCTATCGTAAATAAT 34859 >seq446 Length=200473 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| |||| | ||||| |||| ||| || Sbjct 90947 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 90888 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || |||||||||||||| ||||||||| ||| | || |||||||| | || Sbjct 90887 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAGCTGAA 90828 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || |||| ||||| ||||| Sbjct 90827 ACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGATT 90768 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| || || |||||||| Sbjct 90767 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 90727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694550628153760