Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq7208 266 4e-66 seq691 242 5e-59 seq2365 233 2e-56 seq160 158 2e-33 seq2604 93.3 5e-14 >seq7208 Length=13341 Score = 266 bits (294), Expect = 4e-66 Identities = 465/665 (70%), Gaps = 9/665 (1%) Strand=Plus/Plus Query 183183 TGCCTG-GGAATC-CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGT 183240 |||||| || ||| ||||||| | | ||| || || || || || | || || | | Sbjct 1662 TGCCTGTGGTATCGCTTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGA 1720 Query 183241 TGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGC 183299 |||||||| ||||||| || || | ||| | |||||| |||| || || | || Sbjct 1721 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGC 1779 Query 183300 CTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCT 183359 |||| |||| |||||||| || || || || || || | || || ||| ||| || | Sbjct 1780 CTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTT 1839 Query 183360 CATGTATGGAAA-CAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGAC 183418 || ||| |||| ||| || ||||||||||| || |||||| ||| || || || Sbjct 1840 AATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGAT 1899 Query 183419 TTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTC 183478 | || || || || | || ||||| |||| | ||||| ||| | || || ||||||| Sbjct 1900 TGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTC 1959 Query 183479 CTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGT 183538 ||| | || | || | |||||| | |||| || || || ||||||||||| | Sbjct 1960 CTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAAT 2019 Query 183539 GGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTG 183598 ||||| | || || | |||| |||||||||||| |||| | ||| | |||| Sbjct 2020 GGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTG 2079 Query 183599 TTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATG 183658 |||| ||||| || ||| | ||| | |||| ||| |||||||| |||| | ||| Sbjct 2080 TTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATG 2139 Query 183659 GTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACA 183718 ||||| | | || ||| ||| || || |||| |||| ||| ||||| ||| |||||| Sbjct 2140 GTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACA 2199 Query 183719 ACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGT 183778 ||||||| | ||| || || ||||| | ||||| |||||||| ||||| ||||| || | Sbjct 2200 ACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTAT 2258 Query 183779 TCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCT 183837 ||| ||| ||||| |||| |||| || | || | | | || | || |||||||| || Sbjct 2259 TCAATGCTATGCATAGTTCCTTGGTAACCT-CTAGTTTGCTCAGGGAGACCACTGAAACT 2317 Query 183838 GAGTC 183842 || || Sbjct 2318 GAATC 2322 >seq691 Length=167025 Score = 242 bits (268), Expect = 5e-59 Identities = 333/464 (72%), Gaps = 1/464 (0%) Strand=Plus/Minus Query 183298 GCCTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCG 183357 |||||| | || || | ||| | || || || || || ||| | || || ||| || Sbjct 131174 GCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTTCT 131115 Query 183358 CTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGA 183417 | | ||||||||||| || |||||||||| || |||| ||| || || ||| Sbjct 131114 TTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCGGA 131055 Query 183418 CTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGT 183477 | || || || || || |||||||| ||||| || ||||| ||| | || || |||||| Sbjct 131054 TTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 130995 Query 183478 CCTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAG 183537 ||||| | || | || | || ||| | ||| || || || |||||||||||| Sbjct 130994 CCTTATGAGCTAATTGTTCTACAGTTCTTACTTGT-GTAGCTTGTTATATGGGTCGTGAG 130936 Query 183538 TGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCT 183597 |||||| | || | |||| ||||||| ||||||||| |||||| ||| || ||| Sbjct 130935 TGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCT 130876 Query 183598 GTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGAT 183657 ||||| ||||| || ||||| ||| || | || || |||||||||| ||| |||| Sbjct 130875 GTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTCTGAT 130816 Query 183658 GGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCAC 183717 |||||| | | || ||| ||| || || |||| |||| |||| ||| | | ||||||| Sbjct 130815 GGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCAC 130756 Query 183718 AACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGT 183761 |||||||| ||||| || || |||||| | ||||| |||||||| Sbjct 130755 AACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq2365 Length=77851 Score = 233 bits (258), Expect = 2e-56 Identities = 329/462 (71%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 183298 GCCTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCG 183357 |||||| |||| ||| ||| | || || || || || | ||| || || ||| || Sbjct 13439 GCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATTTTTGGTTCT 13496 Query 183358 CTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGA 183417 | | ||||||||||| || ||||||||||| | || ||||||| | |||| Sbjct 13497 TTACTTTATGGAAACAATATTATCTCTGGTGC-------CATTTTTCCAACTCGATTG-- 13547 Query 183418 CTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGT 183477 || || || || || |||||| ||||| || ||||| ||| | || || |||||| Sbjct 13548 ---CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 13604 Query 183478 CCTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAG 183537 ||||| | || | || | |||||| | |||| || || || |||||||||||| Sbjct 13605 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 13664 Query 183538 TGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCT 183597 |||||| | || | |||| ||||||| ||||||||| |||||| || || ||| Sbjct 13665 TGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCT 13724 Query 183598 GTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGAT 183657 ||| | ||||| || ||||| ||| || | || ||| | |||||||| ||| |||| Sbjct 13725 GTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGAT 13784 Query 183658 GGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCAC 183717 |||||||| | || ||| ||| || || |||| |||| |||| ||| | | ||||||| Sbjct 13785 GGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCAC 13844 Query 183718 AACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGT 183759 |||||||| ||||| || || |||||| | ||||| ||| || Sbjct 13845 AACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 13886 >seq160 Length=286096 Score = 158 bits (174), Expect = 2e-33 Identities = 162/211 (77%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 183904 GGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCAC 183963 || || |||||||| | |||||||| |||||| || ||||| ||||||||| | ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 183964 TTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACT 184023 ||||| ||||| ||||| || || || |||||||| |||||| | ||| |||| ||| Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 184024 ATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 184083 |||||||| ||||| |||||||| || |||||||| || | ||||| | |||||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 184084 GTCCTGAACACCTGGGCAGACGTTCTCAACC 184114 || | || || ||||| || | |||||| Sbjct 255308 GTTATTAATACTTGGGCTGATATCATCAACC 255338 >seq2604 Length=68694 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/201 (71%), Gaps = 10/201 (5%) Strand=Plus/Plus Query 170999 ATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGG 171058 ||| || |||||||||||||| || || | || ||| || || || |||||||| Sbjct 25038 ATACATCCTTGATGCTGCTGAGGATAATGGCGTGGAGTTGCCATACTCATGCCGTGCTGG 25097 Query 171059 TGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATC 171118 |||||||| || |||||||| ||||||||| ||| || ||||| || ||| ||| Sbjct 25098 GGCTTGTTCCACATGTGCTGGCAAAATTGAGGTTGGCGAGGTAGATCAGTCAGATGGATC 25157 Query 171119 TTTCCTTGATGATG---ATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCC 171175 || |||||||||| | ||| ||| ||| | | ||||| || || ||||| || Sbjct 25158 CTTTCTTGATGATGGGCAGCAGGCTGA---AGGCTATGTGCTGACTTGTGTGTCATACCC 25214 Query 171176 TACAAGT--GATTGTGTAATC 171194 | |||| || ||||| ||| Sbjct 25215 T--AAGTCGGACTGTGTCATC 25233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621964578049080