Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq7208 291 9e-74 seq691 280 2e-70 seq2365 251 8e-62 seq160 149 7e-31 >seq7208 Length=13341 Score = 291 bits (322), Expect = 9e-74 Identities = 460/650 (71%), Gaps = 7/650 (1%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| |||| | ||||| |||| | ||| || | || || | ||||| || || || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| ||| | | | || || | ||| || || ||||||||||||| |||| Sbjct 1736 ATGAT-CCCTACCTTATTGACTGCAACCTC-TGTATTTATTATCGCCTTCATCGCAGCTC 1793 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAA-C 164104 |||| || || || ||||| || | || || || |||||| | || ||| |||| | Sbjct 1794 CTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAAC 1853 Query 164105 AACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCC 164164 || || ||||||||||| |||| |||| |||| || ||| | |||| || ||||| Sbjct 1854 AATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCA 1913 Query 164165 ATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 164224 | || ||||| ||| | | || |||||| | ||||| |||||||||| | || || Sbjct 1914 CTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATT 1973 Query 164225 GTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 164284 || | |||||| | |||| | | ||| ||||||||||| ||||||||| || Sbjct 1974 GTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGA 2033 Query 164285 CGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 164344 || | |||| ||||||||||||| || | || || ||||||| || || || | Sbjct 2034 TGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACA 2093 Query 164345 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 164404 || | ||| | |||| ||| |||||||| ||| ||| ||| ||| || | || Sbjct 2094 GCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGA 2153 Query 164405 ATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCAC 164464 |||||||| || ||||||| ||| || |||||||| ||||||||||||| | ||| Sbjct 2154 ATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCAT 2213 Query 164465 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164524 || || || || | || ||||| ||||| || |||||||| || |||| ||| ||||| Sbjct 2214 CCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCAT 2272 Query 164525 GGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTC 164574 |||| |||| || ||| || | | |||||||| |||| ||| || Sbjct 2273 AGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGAAACTGAATC 2322 >seq691 Length=167025 Score = 280 bits (310), Expect = 2e-70 Identities = 349/474 (74%), Gaps = 3/474 (1%) Strand=Plus/Minus Query 164021 TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTC 164080 || || ||||||||||| | || | ||| | || || ||||| || ||| | || | Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 164081 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 164140 |||||| | | ||||||||||| || |||||||||| |||| || ||| | Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 164141 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 164200 || ||||| |||| || ||||| || |||||||| ||| ||| || |||||| | ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 164201 AACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTG-GCATCTATGCTTACAT 164259 || |||||||||| | || |||| | || ||| | ||| | | || || ||| || Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TG-TTATAT 130946 Query 164260 GGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATA 164319 ||||||||||||||||||| || | |||| ||||||| |||||||||| || ||||| Sbjct 130945 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 130886 Query 164320 CTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTC 164379 || |||||||| || || || | ||| || ||| || | || || |||||||||| Sbjct 130885 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAG 130826 Query 164380 TTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCA 164439 ||||||||||| ||| || | || |||||||| || ||||||| ||| | || ||| | Sbjct 130825 TTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 130766 Query 164440 GGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGT 164493 || |||||||||||||| ||||| || || || ||| | || ||||| ||||| Sbjct 130765 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq2365 Length=77851 Score = 251 bits (278), Expect = 8e-62 Identities = 336/467 (72%), Gaps = 14/467 (3%) Strand=Plus/Plus Query 164021 TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTC 164080 || || ||||||||||||| ||| ||| | || || ||||| || | ||| || | Sbjct 13430 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 164081 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 164140 |||||| | | ||||||||||| || ||||||||||| | || ||| ||| Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGC-------CATTTTTCCAAC 13540 Query 164141 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 164200 | || |||| || ||||| || |||||| ||| ||| || |||||| | ||| Sbjct 13541 TCGAT-----TGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 164201 AACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATG 164260 || |||||||||| | || |||| | |||||| | |||| | | ||| ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 164261 GGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATAC 164320 |||||||||||||||||| || | |||| ||||||| |||||||||| || ||| | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 164321 TCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCT 164380 || |||||||| | || || | ||| || ||| || | || ||| | |||||||| | Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 164381 TTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAG 164440 |||||||||| |||||| | || |||||||| || ||||||| ||| | || ||| || Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 164441 GCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGC 164487 | |||||||||||||| ||||| || || || ||| | || ||||| Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 149 bits (164), Expect = 7e-31 Identities = 161/213 (76%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 164634 ACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGC 164693 ||||||| |||||||| | || |||||||| ||| ||||||||||| ||||| | | Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 164694 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCA 164753 ||||||| || || |||||||| || || |||||||| |||||| | || |||| | Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 164754 CCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTC 164813 | |||||||||||||| || |||||||| |||||||| || | | ||| | || |||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 255305 Query 164814 GTGTGCTCAACACCTGGGCAGACGTTCTCAACC 164846 | || | || || ||||| || | |||||| Sbjct 255306 GCGTTATTAATACTTGGGCTGATATCATCAACC 255338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557559536015880