Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq7208 241 2e-58 seq691 233 2e-56 seq2365 210 3e-49 seq160 140 4e-28 >seq7208 Length=13341 Score = 241 bits (266), Expect = 2e-58 Identities = 427/616 (69%), Gaps = 5/616 (1%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||| | |||| ||||| ||| |||| || || | ||||| ||||| || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | |||| | ||||| || || |||| ||| |||| ||||| Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAA-CA 177775 ||| || || || || || || | ||| || || |||||| | || ||| | || || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 177776 ACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCA 177835 | || || |||||||| || |||||| |||| || || | | || || || || Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 177836 TCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTA 177895 | || ||||| || | | | ||||| ||| | |||||||||||||||| | || || Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 177896 TCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACC 177955 | | |||||| | | ||| | | || ||||||||||| ||||||||| || Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 177956 GCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTG 178015 | | |||| |||||| ||||| ||| | || || |||| || || || || | | Sbjct 2035 GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAG 2094 Query 178016 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTA 178075 || | ||| | | || ||| |||||||| ||| ||| | | |||| | | || | Sbjct 2095 CTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAA 2154 Query 178076 TCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 178135 || ||| || ||||||| ||| ||| ||||| ||| ||||||||||||| | ||| | Sbjct 2155 TCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATC 2214 Query 178136 CCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACG 178195 | || ||||| || || || |||||||| || || ||||| || |||| ||| ||||| Sbjct 2215 CATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCATA 2273 Query 178196 GTTCTCTGGTTACTTC 178211 |||| |||| || || Sbjct 2274 GTTCCTTGGTAACCTC 2289 >seq691 Length=167025 Score = 233 bits (258), Expect = 2e-56 Identities = 306/420 (73%), Gaps = 3/420 (1%) Strand=Plus/Minus Query 177753 TGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGC 177812 |||||| | | ||||| ||||| || || ||||||| || |||| ||| | || Sbjct 131121 TGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGC 131062 Query 177813 TATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAA 177872 || || | || || || || || |||||||| || ||||| ||||| ||| | ||||| Sbjct 131061 GATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAA 131002 Query 177873 TGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCG-GTATCTATGCATACATGG 177931 ||||||||||| | || || | | || ||| | | | ||| || || || |||| Sbjct 131001 TGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TGT-TATATGG 130944 Query 177932 GTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACT 177991 ||||||||||||||||| || | | || ||||||| ||| ||||| ||| ||||| | Sbjct 130943 GTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATT 130884 Query 177992 CTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTT 178051 | ||||| || || || || ||||||| ||| | |||| || |||||||||| || Sbjct 130883 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTT 130824 Query 178052 TCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAG 178111 ||||||| | |||| | | || ||| ||| || ||||||| ||| |||| ||| | | Sbjct 130823 TCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGG 130764 Query 178112 CAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTG 178171 ||||||||||||||| ||||| || || |||||||| || || |||||||| ||||| Sbjct 130763 TAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTGGTG 130704 >seq2365 Length=77851 Score = 210 bits (232), Expect = 3e-49 Identities = 325/464 (70%), Gaps = 14/464 (3%) Strand=Plus/Plus Query 177698 TCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTT 177757 |||| ||| |||| ||| ||| | || || || || || | || || | ||||| Sbjct 13437 TCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATTTTTGGTT 13494 Query 177758 CCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTG 177817 | | | ||||| ||||| || || |||||||| || |||| ||| | |||| Sbjct 13495 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AACTCGATTG 13547 Query 177818 GTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTG 177877 || || || || || |||||| || ||||| ||||| ||| | |||||||||| Sbjct 13548 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 13602 Query 177878 GTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTG 177937 |||||| | || || | | |||||| | | ||| | | || |||||||||| Sbjct 13603 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 13662 Query 177938 AGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTC 177997 ||||||||||| || | | || ||||||| ||| ||||| ||| ||| | || |||| Sbjct 13663 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 13722 Query 177998 CAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTG 178057 | || | || || ||||||| ||| | |||| ||| | |||||||| |||||||| Sbjct 13723 CTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 13782 Query 178058 ACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGC 178117 | | |||||| | || ||| ||| || ||||||| ||| |||| ||| | | ||||| Sbjct 13783 ATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 13842 Query 178118 ACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGT 178161 |||||||||| ||||| || || |||||||| || || ||| || Sbjct 13843 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 13886 >seq160 Length=286096 Score = 140 bits (154), Expect = 4e-28 Identities = 137/176 (78%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 178306 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCAC 178365 ||||| || ||||| | ||||||||||| || ||||||||||| ||||| | ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 178366 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 178425 ||||| || || |||||||| || || ||||||||||||||| | ||| |||| || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 178426 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGG 178481 |||||||||||||| || |||||||| |||||||| || | | ||||| || || Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGG 255303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596205760691440