Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq691 226 3e-54 seq7208 219 5e-52 seq2365 219 5e-52 seq160 134 2e-26 >seq691 Length=167025 Score = 226 bits (250), Expect = 3e-54 Identities = 344/483 (71%), Gaps = 5/483 (1%) Strand=Plus/Minus Query 169445 TTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTT 169504 || || ||||||||||| | || | || | || || || || || ||| | || || Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 169505 GCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAAC 169564 ||||||| | | ||||| ||||| || |||||||||| || | || ||| Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 169565 GCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTAC 169624 || ||||| | || || || || || |||||||| ||| ||| ||||||||||| ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 169625 AACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCG-GCATCTATGCTTACAT 169683 || |||||||||| | || |||| | || ||| | | | | | || || ||| || Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TG-TTATAT 130946 Query 169684 GGGTCGTGAGTGGGAATTGTCCTATC-GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTT 169742 |||||||||||||||| | | | || |||||||||||| |||||||| |||||| | Sbjct 130945 GGGTCGTGAGTGGGAACT-TAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAT 130887 Query 169743 ACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGT 169802 | || ||||| ||||| || || | ||||||||| || | ||| | | || ||||| Sbjct 130886 ATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAA 130827 Query 169803 CGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCC 169862 |||||||| | |||| || | || ||||| || || || |||| ||| | || ||| Sbjct 130826 GTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCG 130767 Query 169863 AAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTG 169922 | | |||||||||||||| ||||| || || |||||| | ||||| || || || || Sbjct 130766 AGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTG 130707 Query 169923 GTG 169925 ||| Sbjct 130706 GTG 130704 >seq7208 Length=13341 Score = 219 bits (242), Expect = 5e-52 Identities = 415/608 (68%), Gaps = 2/608 (0%) Strand=Plus/Plus Query 169383 GTCTGTATGTCGGTTGGTTCGGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTT 169442 |||| || || | ||||| || || |||||||||| | | || | |||||| || Sbjct 1707 GTCTTTACATCCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACCTCTG 1766 Query 169443 GTTTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCG 169502 || || ||||||||||||| ||||| || || || || || || || | || || | Sbjct 1767 TATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTG 1826 Query 169503 TTGCTGGTTCTCTGATGTATGGTAA-CAACATCATCTCTGGTGCTGTTGTGCCCTCTTCC 169561 || ||||||| | || ||| | || ||| || ||||||||||| || | || | ||| Sbjct 1827 TTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCT 1886 Query 169562 AACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTG 169621 || ||| | | || || || || | || ||||| ||| | | ||||||||||| Sbjct 1887 GCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTA 1946 Query 169622 TACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTAC 169681 ||||| |||||||||| | || |||| | |||||| | | || | | ||| Sbjct 1947 TACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTAT 2006 Query 169682 ATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCT 169741 ||||||||||| |||||| | | || |||||| ||| |||||||| |||| | Sbjct 2007 ATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCC 2066 Query 169742 TACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGG 169801 || || |||| ||||| || || | ||| ||||| | ||||||| ||| ||||| Sbjct 2067 TATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGA 2126 Query 169802 TCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTC 169861 || ||| | | |||| || | || ||||| || || || |||| ||| || ||| Sbjct 2127 AGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTC 2186 Query 169862 CAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTT 169921 || || ||||||||||||| | ||| || || ||||| | ||||| || || || || Sbjct 2187 CAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTC 2246 Query 169922 GGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAA 169981 || || || || || | || ||||| || | | || || || ||| | || | || Sbjct 2247 GGCGGTTC-CTATTCAATGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAG 2305 Query 169982 ACCACCGA 169989 ||||| || Sbjct 2306 ACCACTGA 2313 >seq2365 Length=77851 Score = 219 bits (242), Expect = 5e-52 Identities = 331/468 (71%), Gaps = 16/468 (3%) Strand=Plus/Plus Query 169445 TTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTT 169504 || || ||||||||||||| ||| || | || || || || || | ||| || || Sbjct 13430 TTTATTATCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCACGAGCCTATT 13487 Query 169505 GCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAAC 169564 ||||||| | | ||||| ||||| || ||||||||||| || | |||||| Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTT-------TCCAAC 13540 Query 169565 GCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTAC 169624 | || | || || || || || |||||| ||| ||| ||||||||||| ||| Sbjct 13541 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 169625 AACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATG 169684 || |||||||||| | || |||| | |||||| | | || | | ||| ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 169685 GGTCGTGAGTGGGAATTGTCCTATC-GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTA 169743 ||||||||||||||| | | | || |||||||||||| |||||||| |||||| | Sbjct 13656 GGTCGTGAGTGGGAACT-TAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAA 13714 Query 169744 CTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTC 169803 || ||||| ||| | || || | ||||||||| || | ||||| |||| ||||| Sbjct 13715 TTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAG 13774 Query 169804 GTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCA 169863 |||||||| | ||||||| | || ||||| || || || |||| ||| | || ||| | Sbjct 13775 TTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 13834 Query 169864 AGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGC 169911 | |||||||||||||| ||||| || || |||||| | ||||| || Sbjct 13835 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 134 bits (148), Expect = 2e-26 Identities = 158/213 (74%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 170058 ACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGC 170117 ||||||| || ||||| | ||||||||||| ||| ||||||||||| ||||| | | Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 170118 ACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCA 170177 ||||||| || || |||||||| || || ||||||||||| ||| | ||| | | Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 170178 CGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTC 170237 | ||||| |||||||| || |||||||| |||||||| || | | ||| | || |||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 255305 Query 170238 GTGTGCTCAACACCTGGGCAGACGTTCTCAACC 170270 | || | || || ||||| || | |||||| Sbjct 255306 GCGTTATTAATACTTGGGCTGATATCATCAACC 255338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592097659649680