Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3589 91.5 2e-13 seq2074 91.5 2e-13 seq1824 86.0 6e-12 >seq3589 Length=27756 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || ||||| |||||||| || || || ||||| | | ||| || |||||||| ||||| Sbjct 16869 AGGCACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTG 16928 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| || |||||||| | |||||| || || ||| || || |||||||| Sbjct 16929 AGGCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGC-GCAGAAAGATCCCGAAAA 16987 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGA 16346 ||| || ||||| || | || || |||| Sbjct 16988 GAAGATGCCCTCGACGCAGGCGAACGCGA 17016 >seq2074 Length=58204 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || |||||||||||||| || || || ||||| | | ||| || |||||||| || || Sbjct 21806 AGGCACGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 21865 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | |||||||| || |||||||| | |||||| || || ||| || || ||||| || Sbjct 21866 AGGCCTGGCATGAGCCCGCGTTTCTTGAGCCAGAAGATGGC-GCAGAACGAGCCCGAGAA 21924 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGA 16346 ||| || ||||| || | || || |||| Sbjct 21925 GAAGATGCCCTCGACGCAGGCGAACGCGA 21953 >seq1824 Length=71116 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||||||| || || || ||||| | | ||| || |||||||| ||||| Sbjct 41688 AGGCAGGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTG 41747 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| || |||||||| | |||||| || || ||| || || |||||||| Sbjct 41748 AGGCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGC-GCAGAAAGATCCCGAAAA 41806 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGA 16346 ||| || ||||| || | || || |||| Sbjct 41807 GAAGATGCCCTCGACGCAGGCGAACGCGA 41835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511341344452960