Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1871 89.7 6e-13 seq3589 87.8 2e-12 seq1824 87.8 2e-12 seq209 82.4 9e-11 >seq1871 Length=66875 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||| || | || || ||||| || |||||||| | ||| | |||| Sbjct 39849 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 39908 Query 54484 GTACGTCTCGATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATT 54541 ||| || | ||| || || || || || |||| ||| || || |||| || | |||| Sbjct 39909 GTATGTTTGGATGGCAGATTCAATGTCATCCAT--ATGTATCCCCACTGAAACTCTCATT 39966 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601 ||||||||||| ||||||||||| | ||| | || | | ||| || | || Sbjct 39967 AACATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCG 40026 Query 54602 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 | |||||| || ||||| |||| || |||||| | ||||||||||| Sbjct 40027 AGAGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 40076 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || || ||||| | || | ||| || | ||| |||| | ||||| |||| ||| || Sbjct 39527 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCG 39586 Query 54245 TTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||||| | ||||| || ||| || ||||| || ||| | || |||||||| || ||| Sbjct 39587 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAACTGA 39645 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| || | || ||| || | ||||||||||| Sbjct 39646 AACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGAT 39705 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||||| || || ||||| ||||| || || |||||||| Sbjct 39706 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 39747 >seq3589 Length=27756 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || |||||||| ||||||||||| | || | |||||||| || ||||| Sbjct 16872 CACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 16931 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| ||||| || || || ||||| || |||| |||| || ||||| |||||||| Sbjct 16932 CCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAA 16990 Query 24254 AATTCCTTCTAC 24265 || || || || Sbjct 16991 GATGCCCTCGAC 17002 >seq1824 Length=71116 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || |||||||| ||||||||||| | || | |||||||| || ||||| Sbjct 41691 CAGGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 41750 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| ||||| || || || ||||| || |||| |||| || ||||| |||||||| Sbjct 41751 CCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAA 41809 Query 24254 AATTCCTTCTAC 24265 || || || || Sbjct 41810 GATGCCCTCGAC 41821 >seq209 Length=235896 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || || ||||| | || | ||| || | ||| |||| | ||||| |||| ||| ||| Sbjct 50839 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 50898 Query 54245 TTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||||| | ||||| || ||| || ||||| || ||| | || |||||||| | ||| Sbjct 50899 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAGCTGA 50957 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| || | || ||| || | ||||||||||| Sbjct 50958 AACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGAT 51017 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||||| || || ||||| ||||| || || |||||||| Sbjct 51018 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 51059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593636786869440