Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3589 104 5e-17 seq1824 104 5e-17 seq209 102 2e-16 seq1871 98.7 2e-15 seq2074 89.7 1e-12 >seq3589 Length=27756 Score = 104 bits (114), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| |||||||| || || | ||||| Sbjct 16586 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCAT 16645 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| |||||||| |||||||| ||| | || |||||| | ||| | Sbjct 16646 CCAGTCGAACGGGTTGGCCACGTTGTACATCTTCTTGTGACCCAGCGCCATGAGCAGGCG 16705 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| |||||| Sbjct 16706 GTCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGCGCA 16765 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTC 157467 ||| |||| || || | | ||| |||| ||| Sbjct 16766 GGGGAGCG-CGTCGCAGACGAACTCGCGCTC 16795 >seq1824 Length=71116 Score = 104 bits (114), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| |||||||| || || | ||||| Sbjct 41405 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCAT 41464 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| |||||| || |||||||| ||| | || |||||| | ||| | Sbjct 41465 CCAGTCGAACGGGTTGACGACGTTGTACATCTTTTTGTGGCCCAGCGCCATGAGCAGGCG 41524 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| |||||| Sbjct 41525 GTCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGCGCA 41584 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTC 157467 ||| |||| || || | | ||| |||| ||| Sbjct 41585 GGGGAGCG-CGTCGCAGACGAACTCGCGCTC 41614 >seq209 Length=235896 Score = 102 bits (112), Expect = 2e-16 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 |||| ||| |||| |||| | || || || || || | ||||| ||||| || | Sbjct 51399 TGGATAGCGAGATTATTTACGATAGGGACTTCGATTATGACTACTTTGGGTTCAAGACTC 51340 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 |||||| || || ||| | || ||| ||| ||| | || ||| || || ||||||| Sbjct 51339 TGGAGAGGTCTTACCTCTTGAAGCTTGGTGGGAAGGTTGTCGAAAGACCACAACACATGT 51280 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTA 248960 | ||| |||| | || ||||| |||||||||||||| || | | ||| || | || || Sbjct 51279 TAATGAGAGTTTCAGTGGGGATACACAAGGATGACATTGA-ATC-TGCCATCAAAACATA 51222 Query 248961 -CACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 || | | ||| | | |||||| | |||||||| |||| ||||| ||||| || |||| Sbjct 51221 CCATCTG-ATGTCTCAGCGCTGGTTTACACATGCTTCACCAACGCTTTTCAATGCTGGTA 51163 Query 249020 C 249020 | Sbjct 51162 C 51162 >seq1871 Length=66875 Score = 98.7 bits (108), Expect = 2e-15 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 |||| ||| |||| |||| | || || || || || | ||||| |||||||| | Sbjct 40087 TGGATAGCGAGATTATTTACGATAGGGACTTTGACTATGACTACTTTGGGTTCAAAACTC 40028 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 | |||| || || ||| | || ||| ||| ||| | || ||| || |||||||||| Sbjct 40027 TCGAGAGGTCTTACCTCTTAAAGCTTGGTGGTAAGGTTGTTGAAAGACCACAGCACATGT 39968 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTA 248960 | ||| |||| | || ||||| || | ||||||||| || | | ||| || | || || Sbjct 39967 TAATGAGAGTTTCAGTGGGGATACATATGGATGACATTGA-ATC-TGCCATCCAAACATA 39910 Query 248961 -CACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 || | | ||| | | |||||| | |||||||| |||| ||||| ||||| ||||| | Sbjct 39909 CCATCTG-ATGTCTCAGCGCTGGTTTACACATGCTTCACCAACGCTTTTCAATGCCGGCA 39851 Query 249020 C 249020 | Sbjct 39850 C 39850 >seq2074 Length=58204 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 21523 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTCCAT 21582 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| || |||||| |||||||| ||| | || ||||| | ||| | Sbjct 21583 CCAGTCGAACGGATTGGCGACGTTGTACATCTTCTTGTGCCCCAAAGCCATTAGCAGGCG 21642 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| || ||||| |||| | || | || |||| ||| ||| Sbjct 21643 GTCGGCGACGAACTCGACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGAGTGCGCA 21702 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTC 157467 |||||||| || || | | ||| |||| ||| Sbjct 21703 GGGAAGCG-CGTCGCAGACGAACTCGCGCTC 21732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073609177781504