Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq84 89.7 5e-13 seq2252 87.8 2e-12 seq927 87.8 2e-12 seq1785 86.0 6e-12 >seq84 Length=349560 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || | |||| | || |||||||| || ||| Sbjct 21041 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGCCCATCCTCGAGCTGCTTGCCA 20982 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || ||||| ||||| || ||||| ||| || || Sbjct 20981 GCGAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 20922 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||||||||||| ||| | |||||||| || | || Sbjct 20921 ACGTTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 20862 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 20861 TTCACGAAGATCTGCAT 20845 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| || | |||| ||||| ||||| || ||| Sbjct 21953 GTGGACTCCTTCTGAATGTTATAGTCTGCAAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 21894 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || ||||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 21893 GCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 21834 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||||| ||| | ||||||||||| | || Sbjct 21833 ACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 21774 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 21773 TTAACGAAGATCTGCATA 21756 >seq2252 Length=53314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTC 139614 || ||||||| || ||||||||||||||||||||||| ||| | ||| || ||||| Sbjct 37763 ACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCT-AATGTTCTTCCATCTTC 37821 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 | || ||||||||| | ||||| | |||||| || || || ||||| || ||||| Sbjct 37822 CAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 37878 >seq927 Length=112269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | || | | || || ||||| || ||| Sbjct 58192 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGCCCATCCTCCAGCTGCTTGCCA 58133 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||||||||| || || || ||||| || ||||| ||| || || Sbjct 58132 GCAAAGATGAGACGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 58073 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||||||||||| ||| | ||||||||||| | || Sbjct 58072 ACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 58013 Query 139748 TTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 58012 TTGACAAAGATCTGCATA 57995 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| ||||| | ||||| | || || ||||| || || Sbjct 58420 GTAGACTCCTTCTGTATGTTGTAATCAGCAAGTGTGCGCCCATCCTCAAGCTGCTTGCCG 58361 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||||| ||||| || ||||| ||| || || Sbjct 58360 GCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 58301 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||||||||||| ||| | ||||||||||| | || Sbjct 58300 ACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 58241 Query 139748 TTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 58240 TTGACAAAGATCTGCATA 58223 >seq1785 Length=68507 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || | |||| ||| || || || || ||| Sbjct 64628 GTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCCAGTTGCTTGCCA 64569 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| |||||||| || || ||||| || ||||| ||| || || Sbjct 64568 GCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 64509 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||| ||||||| ||| | ||||||||||| | || Sbjct 64508 ACGTTGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 64449 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 64448 TTCACGAAGATCTGCAT 64432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495993137257600