Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1871 104 3e-17 seq3589 98.7 1e-15 seq1824 98.7 1e-15 seq2074 96.9 5e-15 seq209 96.9 5e-15 >seq1871 Length=66875 Score = 104 bits (114), Expect = 3e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | || || ||||| || |||||||| | ||||| |||| Sbjct 39849 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 39908 Query 80394 GTACGTCTCAATAGCTGATTCTATATC--CCATTGATGAATTCCTACCGCGACACGCATT 80451 ||| || | || || ||||| || || |||| ||| || || || | || | |||| Sbjct 39909 GTATGTTTGGATGGCAGATTCAATGTCATCCAT--ATGTATCCCCACTGAAACTCTCATT 39966 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 ||||||||||| ||||||||||| | ||| | | || || | |||||| | || Sbjct 39967 AACATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCG 40026 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 | |||||| || ||||| |||| || |||||| | ||||||||||| Sbjct 40027 AGAGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 40076 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | || | ||| || | ||| |||| | ||||| |||| ||| || Sbjct 39527 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCG 39586 Query 80155 TTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||| || ||||| || ||| || ||||| || ||| | || |||||||| || ||| Sbjct 39587 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAACTGA 39645 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 39646 AACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGAT 39705 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||| ||||| ||||| || || |||||||| Sbjct 39706 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 39747 >seq3589 Length=27756 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||||||||||||||| | || || |||||||| || ||||| Sbjct 16872 CACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 16931 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||| || || || ||||| || |||| |||| || || || |||||||| Sbjct 16932 CCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAA 16990 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| || || || || | ||| Sbjct 16991 GATGCCCTCGACGCAGGCGAACGCGACGAGCCGCTC 17026 >seq1824 Length=71116 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||||||||||||||| | || || |||||||| || ||||| Sbjct 41691 CAGGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 41750 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||| || || || ||||| || |||| |||| || || || |||||||| Sbjct 41751 CCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAA 41809 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| || || || || | ||| Sbjct 41810 GATGCCCTCGACGCAGGCGAACGCGACGAGCCGCTC 41845 >seq2074 Length=58204 Score = 96.9 bits (106), Expect = 5e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 21809 CACGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 21868 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || || || || ||||| || |||| |||| || || || || ||||| Sbjct 21869 CCTGGCATGAGCCCGCGTTTCTTGAGCCAGAAGATGG-CGCAGAACGAGCCCGAGAAGAA 21927 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT 50115 ||| || || || ||| || || ||||| | |||| Sbjct 21928 GATGCCCTCGACGCAGGCGAACGCGACAAGACGCTCT 21964 >seq209 Length=235896 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | || | ||| || | ||| |||| | ||||| |||| ||| ||| Sbjct 50839 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 50898 Query 80155 TTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||| || ||||| || ||| || ||||| || ||| | || |||||||| | ||| Sbjct 50899 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAGCTGA 50957 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 50958 AACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGAT 51017 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||| ||||| ||||| || || |||||||| Sbjct 51018 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 51059 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | || || ||||| || |||||||| | ||||| |||| Sbjct 51161 AGTACCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 51220 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | || || ||||| || || | ||| || || || || | || | ||||| Sbjct 51221 GTATGTTTTGATGGCAGATTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTA 51279 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||||||| || |||||||| || | ||| | | ||||| | |||||| | |||| Sbjct 51280 ACATGTGTTGTGGTCTTTCGACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 51339 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || || ||||| |||| || ||||| | ||||||||||| Sbjct 51340 GAGTCTTGAACCCAAAGTAGTCATAATCGAAGTCCCTATCGTAAATAAT 51388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718166195301920