Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1871 98.7 1e-15 seq209 91.5 2e-13 seq3589 87.8 2e-12 seq1824 87.8 2e-12 >seq1871 Length=66875 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | || || ||||| || |||||||| | ||||| |||| Sbjct 39849 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 39908 Query 72477 GTACGTCTCAATAGCTGATTCTATATC--CCATTGATGTATTCCTACCGCGACACGCATT 72534 ||| || | || || ||||| || || |||| |||||| || || | || | |||| Sbjct 39909 GTATGTTTGGATGGCAGATTCAATGTCATCCAT--ATGTATCCCCACTGAAACTCTCATT 39966 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 ||||| ||||| ||||||||||| | ||| | | || || | ||| || | || Sbjct 39967 AACATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCG 40026 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 | |||||| || ||||| |||| || |||||| | ||||||||||| Sbjct 40027 AGAGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 40076 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | ||| || | ||| |||| | ||||| |||| ||| || Sbjct 39527 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCG 39586 Query 72238 TTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||||| | ||||| || ||| || ||||| || ||| | || ||||||||| || ||| Sbjct 39587 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAACTGA 39645 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 39646 AACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGAT 39705 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || || ||||| ||||| || || |||||||| Sbjct 39706 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 39747 >seq209 Length=235896 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | ||| || | ||| |||| | ||||| |||| ||| ||| Sbjct 50839 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 50898 Query 72238 TTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||||| | ||||| || ||| || ||||| || ||| | || ||||||||| | ||| Sbjct 50899 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAGCTGA 50957 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 50958 AACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGAT 51017 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || || ||||| ||||| || || |||||||| Sbjct 51018 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 51059 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | || || ||||| || |||||||| | ||||| |||| Sbjct 51161 AGTACCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 51220 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | || || ||||| || || | ||| ||||| || || | || | ||||| Sbjct 51221 GTATGTTTTGATGGCAGATTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTA 51279 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||| || || |||||||| || | ||| | | ||||| | ||| || | |||| Sbjct 51280 ACATGTGTTGTGGTCTTTCGACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 51339 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||| || || ||||| |||| || ||||| | ||||||||||| Sbjct 51340 GAGTCTTGAACCCAAAGTAGTCATAATCGAAGTCCCTATCGTAAATAAT 51388 >seq3589 Length=27756 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||||||||||||||||| || | || | |||||||| || ||||| Sbjct 16872 CACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 16931 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||| || || || ||||| || || | |||| || ||||| |||||||| Sbjct 16932 CCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGAT-GGCGCAGAAAGATCCCGAAAAGAA 16990 Query 42184 GATTCCTTCTAC 42195 ||| || || || Sbjct 16991 GATGCCCTCGAC 17002 >seq1824 Length=71116 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||||||||||||||||| || | || | |||||||| || ||||| Sbjct 41691 CAGGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 41750 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||| || || || ||||| || || | |||| || ||||| |||||||| Sbjct 41751 CCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGAT-GGCGCAGAAAGATCCCGAAAAGAA 41809 Query 42184 GATTCCTTCTAC 42195 ||| || || || Sbjct 41810 GATGCCCTCGAC 41821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671043327765280