Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2074 179 5e-40 seq3589 167 3e-36 seq1824 163 4e-35 >seq2074 Length=58204 Score = 179 bits (198), Expect = 5e-40 Identities = 591/892 (66%), Gaps = 40/892 (4%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || |||| ||| | | || ||||| | ||||| ||||| ||| || | Sbjct 22388 CCATGTTCCCGATCAAGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCCGTGGCTTCGT 22329 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTG 125111 | ||||| | ||| ||||| || || ||| ||| || | ||||| | | || | Sbjct 22328 TCTGGACCGCCGAGGAGGTGGACCTCTCCGCCGACGTGCGGCACTGGGACGCCGCGCTCA 22269 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 || || ||||| | || || || ||| || | |||||||| |||| ||||| || Sbjct 22268 ACGCGGAC-GAGCGCCACTTCATCTCCCACGTTCTCGCCTTCTTCGCCGCGTCCGACGGC 22210 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCAT-TC-CAGAGGTG 125228 ||||| ||| || ||| | | || ||| | || || ||| || | |||| | Sbjct 22209 ATCGTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGACGT---CCAGGTCGCCGAGGCG 22153 Query 125229 TCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || || || ||||| ||||| ||| ||||||||| | |||||||| |||||||| Sbjct 22152 -CGCGCGTTCTACGGCTTCCAGATCGCCATTGAGAACATCCACTCGGAGATGTACTCGCT 22094 Query 125288 ACTGATTGACATGTACATTCGCGATC-CGCAACGTAAACACATGCTCTTTAACGCAATCG 125346 ||| | || | ||||| ||||| ||| | || || |||||| ||| || | Sbjct 22093 GCTGCTGGAGACCTACATCCGCGACGGCGCGGAG-AAGGACCGGCTCTTCCGCGCCATAG 22035 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | ||||| || | | || ||||| | ||| || || |||||||| | || | Sbjct 22034 AGACGGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGACCATGCGCTGGATCGAGGGCGGCG 21975 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| | || | || || || |||||| ||| |||||||||||||| ||| Sbjct 21974 AGCGCTTCGCA----GAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCG 21919 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | ||| |||| ||||||| ||||||||||| ||||| |||||||| || || || Sbjct 21918 GGCTCGTTCTGCG-CCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTT 21860 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 | |||||| | || || || ||||||||||| ||||| ||||| || || || | Sbjct 21859 CTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCGTGCCTTCT-CT 21801 Query 125585 TCGCAACT-ATCTGCGTCCCGAGTGCAGA-TCCAGCGATGAAAAGGTCATCAACATTGTA 125642 || | || || ||||| | | || ||| || ||| | | || || Sbjct 21800 ACG-ACCTCCTCCGCGTCAAGCTGGACGAGTCCCGC---------GTCCGCGAGATCGTC 21751 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCA-TGAT 125701 |||| ||||| || || | ||||| | ||| | || || | ||| | | Sbjct 21750 GCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCGCTTCC-CTGCGCACTCGT 21692 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTA 125761 ||||||||| || ||| ||| || ||||| | ||||| || || || || || || | Sbjct 21691 CGGCATGAACGGCGTGCTTATGAGCCAGTACGTCGAGTTCGTCGCCGACCGCCTGCT-AA 21633 Query 125762 CGAGTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAG 125818 | || | || | | ||||| ||||||| | ||||| || || | ||| Sbjct 21632 TGGCTT--TGGGGCACAAGAAGATGTACAACGTCGCCAATCCGTTCGACTGGATGGAGCT 21575 Query 125819 CATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||| || || |||||||||||||||| ||||||||| ||| |||||||| Sbjct 21574 CATCTCCCTGCAGGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 21523 >seq3589 Length=27756 Score = 167 bits (184), Expect = 3e-36 Identities = 399/588 (68%), Gaps = 19/588 (3%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || |||| ||| | | || ||||| | ||||| ||||| ||| || | Sbjct 17451 CCATGTTCCCGATCAAGTACCCCCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGT 17392 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTG 125111 | ||||| | ||| ||||| || || ||| ||| | | | ||||| | | || | Sbjct 17391 TCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTCA 17332 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 || || ||||| | || || || ||| | | || ||||| |||| |||||| || Sbjct 17331 ACCCCGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCTTTCTTCGCCGCCTCCGACGGC 17273 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCA--TTCCAGAGGTG 125228 || || ||| || ||| | | || ||| | || || ||| | | |||| | Sbjct 17272 ATAGTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGACGT---CCAGGTGGCCGAGGCG 17216 Query 125229 TCGTGC-TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || || |||||||| ||||| ||| || |||||| | |||||||| |||||||| Sbjct 17215 -CGCGCCTTTTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCT 17157 Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCG 125346 ||| | || | ||||| ||||| | || || || || || || ||| || | Sbjct 17156 GCTGCTGGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACCGCCTGTTCCGCGCCATAG 17098 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || || || | | || ||||| | |||| || || |||||||| | || | Sbjct 17097 AGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGAGGGCGGCG 17038 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| |||| | || || || |||||| ||| |||||||||||||||||| Sbjct 17037 AGCGCTTCG----CCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCG 16982 Query 125466 GGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || ||| |||| ||||||| ||||||||||| ||||| |||||||| || || || Sbjct 16981 GGATCTTTCTGCG-CCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTT 16923 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | |||||| | || || || |||||||| || ||||| |||||||| Sbjct 16922 CTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGC 16875 >seq1824 Length=71116 Score = 163 bits (180), Expect = 4e-35 Identities = 583/891 (65%), Gaps = 38/891 (4%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || |||| ||| | | || ||||| | ||||| ||||| ||| || | Sbjct 42270 CCATGTTCCCGATCAAGTACCCCCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGT 42211 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTG 125111 | ||||| | ||| ||||| || || ||| ||| | | | ||||| | | || | Sbjct 42210 TCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTCA 42151 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 || || ||||| | || || | ||| | | || ||||| |||| |||||| || Sbjct 42150 ACCCCGAC-GAGCGCCACTTCATCGCCCACGTGCTAGCTTTCTTCGCCGCCTCCGACGGC 42092 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCA--TTCCAGAGGTG 125228 || || ||| || ||| | | || ||| | || || ||| | | |||| | Sbjct 42091 ATAGTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGACGT---CCAGGTGGCCGAGGCG 42035 Query 125229 TCGTGC-TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || || |||||||| ||||| ||| || |||||| | |||||||| |||||||| Sbjct 42034 -CGAGCCTTTTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCT 41976 Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCG 125346 ||| | || | ||||| ||||| | || || || || || || ||| || | Sbjct 41975 GCTGCTGGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACCGCCTGTTCCGCGCCATAG 41917 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || || || | | || ||||| | |||| || || |||||||| | || Sbjct 41916 AGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGAGGGCGGAG 41857 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| |||| | || || || |||||| ||| |||||||||||||||||| Sbjct 41856 AGCGCTTCG----CCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCG 41801 Query 125466 GGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || ||| |||| ||||||| ||||||||||| ||||| |||||||| || || || Sbjct 41800 GGATCTTTCTGCG-CCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTT 41742 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 | |||||| | || || || |||||||| || ||||| ||||||||| || || | Sbjct 41741 CTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCCTGCCTCCTCT- 41683 Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 | || ||| ||| || || || | ||| ||| | | || || | Sbjct 41682 --ACGACGTTCT-----CCGCGTCAAGCTCGA-CGAGTCGCGCGTCCGCGAGATAGTCGC 41631 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 ||| ||||| ||||| | ||||| | ||| | || || | | | || Sbjct 41630 CGACGCCGTCGACATAGAGCGCGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTAGTCGG 41571 Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764 ||||||| || ||| ||| | ||||||| ||||| || || || || || || | Sbjct 41570 CATGAACGGCGTGCTCATGAGTCAGTACATCGAGTTCGTCGCCGACCGCCTGCT---CAT 41514 Query 125765 GTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC-- 125819 | | | |||| | ||||| ||||||| | || || || || | ||| ||| Sbjct 41513 GGCGCTGGGCCACAAAAAGATGTACAACGTCGTCAACCCGTTCGACTGGATG--GAGCTT 41456 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || |||| ||||||||||| ||||||||| ||| |||||||| Sbjct 41455 ATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 41405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740953339693280