Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1689 140 7e-28 seq1785 125 2e-23 seq2252 102 2e-16 seq5287 96.9 8e-15 seq6815 87.8 4e-12 seq3589 87.8 4e-12 seq1824 87.8 4e-12 seq1266 87.8 4e-12 seq267 87.8 4e-12 >seq1689 Length=72926 Score = 140 bits (154), Expect = 7e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || || || | ||||| || ||||| || || ||||| Sbjct 2333 ATGCCACCCCTAAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCT 2392 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | |||||||| || || |||||||| || || |||||||| || || || Sbjct 2393 GCCAGTGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGCCTCTGCTGGTCCGGG 2452 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || ||||| |||||||||||||| || ||||| || | || || || | || Sbjct 2453 GGGATGCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCAATAGTGTC-AGAGCTCTC 2511 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || ||||| || ||||| || || |||||||||||||| Sbjct 2512 AACCTCCAATGTTATTGTCTTTCCTGTAAGGGTCTTCACAAATATCTGCAT 2562 Score = 140 bits (154), Expect = 7e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | ||| || || || | || || || ||||| || || || ||| Sbjct 2789 ATTCCACCCCTCAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCA 2848 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || |||||||| || || ||||||||||| |||||||| || || || Sbjct 2849 GCCAATGTACGGCCATCTTCTAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCCGGG 2908 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 ||||| || || |||||||||||||| || || ||||| | | || || | || | || Sbjct 2909 GGTATACCCTCCTTATCCTGAATCTTGGCCTTAACATTGTTGATCGTGTC-CGAGCTCTC 2967 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| ||||| || || ||||||||||| Sbjct 2968 AACCTCGAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACGAATATCTGCAT 3018 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | ||||| || ||||| ||||| || ||| Sbjct 2105 ATCCCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCA 2164 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || || ||||| || |||||||| || || | ||| || || || Sbjct 2165 GCCAATGTGCGCCCATCCTCGAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTGGT 2224 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||| |||||||| || ||||| || | || || || | || Sbjct 2225 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTG-AGCTCTC 2283 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| ||||| || || || ||||| |||||||| Sbjct 2284 AACCTCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCAT 2334 >seq1785 Length=68507 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || ||||| | || || | || || || || || || ||| Sbjct 65312 GTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTACCA 65253 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || || ||||| || || || || ||||| |||||||| || Sbjct 65252 GCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTC 65193 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || ||||||| || || ||||| |||||||| || Sbjct 65192 ACGTTATCAATGGTGTCCGAAGACTCCACCTCTAAGGTGATGGTCTTGCCAGTAAGCGTC 65133 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 65132 TTCACAAAGATCTGCAT 65116 >seq2252 Length=53314 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| ||||| || || | || | ||| || ||||| ||||| ||||| |||| Sbjct 37743 TTCCACCTCTGAGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAG 37802 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||| | ||| || ||||||||||| ||||| || || || || | Sbjct 37803 CTAATGTTCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGG 37862 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 37863 GAATGCCCTCCTTGTCCTGAA 37883 >seq5287 Length=9303 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 5379 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCCAGCTGCTTACCG 5320 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||| ||| || || || || || || || || ||||| ||||| || || Sbjct 5319 GCGAAGATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 5260 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || | ||| || ||||| || || || ||||| || || || || Sbjct 5259 ACGTTGTCGATGGTGTC-CGAGGACTCCACCTCCAGCGTGATCGTCTTGCCCGTCAGGGT 5201 Query 104542 TTTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 5200 CTTCACGAAGATCTGCATTTTG 5179 >seq6815 Length=3053 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 165090 TTTATACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATA 165149 |||| || ||| | ||||| ||| ||| ||||| | ||| ||||| |||||||| | Sbjct 557 TTTACACTGATGATGATGAGTGGTCTACCTGGAAGAGGATAGGAGATCCAGTTTTACACA 616 Query 165150 TAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAG 165209 |||| || ||| |||||||||||| ||| |||| || || ||| ||||||| | || | Sbjct 617 TAGAACTGCGAAAATGGGCAGATATCATGGTGATTGCTCCATTATCAGCAAATACCTTGG 676 Query 165210 CGAAGATA 165217 | ||| || Sbjct 677 CTAAGGTA 684 >seq3589 Length=27756 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || || || || ||||||||||| ||||| ||| ||||| ||| | |||||| | ||| Sbjct 17002 GTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGC 16943 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 || ||||| || | |||||||| ||||| | || | | ||||| ||| | |||||| Sbjct 16942 CTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGC 16883 Query 269273 GACTTCGCTTG 269283 ||||| || || Sbjct 16882 GACTTTGCGTG 16872 >seq1824 Length=71116 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || || || || ||||||||||| ||||| ||| ||||| ||| | |||||| | ||| Sbjct 41821 GTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGC 41762 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 || ||||| || | |||||||| ||||| | || | | ||||| ||| | |||||| Sbjct 41761 CTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGC 41702 Query 269273 GACTTCGCTTG 269283 ||||| || || Sbjct 41701 GACTTTGCCTG 41691 >seq1266 Length=92444 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 165090 TTTATACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATA 165149 |||| || ||| | ||||| ||| ||| ||||| | ||| ||||| |||||||| | Sbjct 9641 TTTACACTGATGATGATGAGTGGTCTACCTGGAAGAGGATAGGAGATCCAGTTTTACACA 9700 Query 165150 TAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAG 165209 |||| || ||| |||||||||||| ||| |||| || || ||| ||||||| | || | Sbjct 9701 TAGAACTGCGAAAATGGGCAGATATCATGGTGATTGCTCCATTATCAGCAAATACCTTGG 9760 Query 165210 CGAAGATA 165217 | ||| || Sbjct 9761 CTAAGGTA 9768 >seq267 Length=213022 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | || | || || ||||||||||| || || |||| Sbjct 31452 TTCCACCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAG 31511 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||| | ||| || |||||||| || ||||| || || || || | Sbjct 31512 CTAACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGG 31571 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 31572 GAATGCCCTCCTTGTCCTGAA 31592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151229810807024