Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq84 102 7e-17 seq927 93.3 4e-14 seq1785 91.5 1e-13 >seq84 Length=349560 Score = 102 bits (112), Expect = 7e-17 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || |||||||| ||||| || || ||| ||||||| ||||| Sbjct 21731 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTGCGCCCGTCCTCAAGCTG 21673 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | | |||||| ||| || | || |||||||||| || || Sbjct 21672 CTTGCCAGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATCTT 21613 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| || | ||||||| ||| | || ||||| || || Sbjct 21612 GGCCTTGACGTTGTCG--ATGGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTTGCCA 21555 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || ||||||||||| Sbjct 21554 GTGAGGGTCTTAACGAAAATCTGCAT 21529 >seq927 Length=112269 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||||| ||| ||| ||| | ||||| |||||||| ||| | Sbjct 58415 CTCCTTCTGTATGTTGTAATCAG-CAAGTGTGCGCCCATCCTCAAGCTGCTTGCCGGCAA 58357 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | | |||||| ||| || | | ||||||||| || || ||||| Sbjct 58356 AGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGT 58297 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | ||||||| ||| | || ||||| || |||||||| || || | Sbjct 58296 TGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 58237 Query 48714 CAAAAATCTGCAT 48726 |||| |||||||| Sbjct 58236 CAAAGATCTGCAT 58224 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || || || || ||| | ||||||||||| Sbjct 58198 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTACGCCCATCCTCCAGCTG 58140 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | ||| ||||| ||| || | | ||||||||| || || Sbjct 58139 CTTGCCAGCAAAGATGAGACGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 58080 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| || | ||||||| ||| | || ||||| || ||||| Sbjct 58079 GGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGT 58020 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || ||||| |||||||| Sbjct 58019 GAGGGTCTTGACAAAGATCTGCAT 57996 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || |||||||||||||| Sbjct 57970 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGC 57911 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | ||||||||| ||| || | | ||||||||| || || Sbjct 57910 TTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGTATGCCCTCCTTGTCCTGGATCTTG 57851 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| || | |||||| ||| | || ||||| || || | Sbjct 57850 GCCTTGACGTTGTCG--ATGGTGTCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCAG 57793 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || ||||| |||||||| Sbjct 57792 TGAGGGTCTTGACAAAGATCTGCAT 57768 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| ||||||||||| ||||| | | || || | ||||||||||| Sbjct 58654 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTGCGGC-CATCCTCCAGCTG 58596 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | ||||||||| ||| || | || |||||||||| || || Sbjct 58595 CTTCCCTGCAAAGATGAGACGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATCTT 58536 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || || |||| ||| ||| | ||| ||||| || || || Sbjct 58535 GGCCTTCACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAGTGTGATGGTCTTGCCAGT 58476 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || |||||||| |||||||| Sbjct 58475 CAAGGTCTTCACAAAGATCTGCAT 58452 >seq1785 Length=68507 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| ||||| ||||||||||| || |||| || | ||||| Sbjct 65325 CACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTC 65266 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||||||| | |||| | ||||||||| ||| || | | ||||||||| Sbjct 65265 CAGCTGCTTACCAGCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 65206 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | ||||| || | ||||||| ||| | || ||||| || Sbjct 65205 GATCTTTGCCTTCACGTTATCAATGGTGTCCGAAGACTCCACCTCTAAGGTGATGGTCTT 65146 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||| |||||||| Sbjct 65145 GCCAGTAAGCGTCTTCACAAAGATCTGCAT 65116 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| ||||| || || || |||||||||| ||||| || | Sbjct 64623 CTCCTTCTGGATGTTGTAGTCAGC-AAGGGTGCGGCCGTCCTCCAGTTGCTTGCCAGCAA 64565 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||||||| || | | ||||||||| || || ||||| Sbjct 64564 AGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGT 64505 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | ||||| ||| | || ||||| || |||||||| || |||| Sbjct 64504 TGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA 64445 Query 48714 CAAAAATCTGCATC 48727 | || ||||||||| Sbjct 64444 CGAAGATCTGCATC 64431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421192528659428