Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq312 114 7e-21 seq33 113 2e-20 seq1555 111 8e-20 seq1327 109 3e-19 seq1185 109 3e-19 seq149 109 3e-19 seq1276 107 1e-18 seq907 107 1e-18 seq628 107 1e-18 seq434 107 1e-18 seq6557 105 3e-18 seq4034 105 3e-18 seq2025 105 3e-18 seq2069 104 1e-17 seq878 104 1e-17 seq301 104 1e-17 seq30 104 1e-17 seq4454 102 4e-17 seq2470 102 4e-17 seq244 96.9 2e-15 seq208 96.9 2e-15 seq700 95.1 6e-15 seq175 91.5 8e-14 >seq312 Length=196146 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 144281 AACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 144222 Query 11512 CAACTGAGCTAATGGGCCGTCGACG 11536 |||||||||||||||||| ||||| Sbjct 144221 CAACTGAGCTAATGGGCCTGCGACG 144197 >seq33 Length=486489 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || ||||| ||||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 365644 ATGAAAAAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 365702 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 365703 ACGCTCTAACCAACTGAGCTAATAGGCC 365730 >seq1555 Length=78818 Score = 111 bits (122), Expect = 8e-20 Identities = 89/106 (84%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 11424 CAGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGAC 11483 |||| ||| || |||| |||||| | | |||||||||| | | |||||||| |||| Sbjct 49586 CAGGAAAAAATTAAATTT-TAAAAACTTA--TTGGCCCATGCAGGTCTCGAACCTGCGAC 49530 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 49529 CTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 49484 >seq1327 Length=93452 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 22321 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 22262 Query 11516 TGAGCTAATGGGCCGTC 11532 ||||||||| ||||||| Sbjct 22261 TGAGCTAATAGGCCGTC 22245 >seq1185 Length=97684 Score = 109 bits (120), Expect = 3e-19 Identities = 79/90 (88%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||| |||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 81886 AAGAAAAAA--AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 81829 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 81828 CGACGCTCTAACCAACTGAGCTAATAGGCC 81799 >seq149 Length=274199 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 27939 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 27998 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 27999 AACTGAGCTAATAGGCC 28015 >seq1276 Length=97739 Score = 107 bits (118), Expect = 1e-18 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 68320 AAAAAAAAATGTATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 68261 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||| |||||||||| |||||| Sbjct 68260 GACGCTCTAACCAGCTGAGCTAATAGGCCGT 68230 >seq907 Length=116932 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 9994 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 9935 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 9934 CAACTGAGCTAATAGGCC 9917 >seq628 Length=142217 Score = 107 bits (118), Expect = 1e-18 Identities = 91/109 (83%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||||| || ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 69133 TTAA-AAAAAAGGAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 69077 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTGTGATTTT 11547 |||||||||| ||||||||||||||| |||| |||| | || || ||| Sbjct 69076 ACGACGCTCTAACCAACTGAGCTAATAGGCC-TCGATGCATGCGACTTT 69029 >seq434 Length=172095 Score = 107 bits (118), Expect = 1e-18 Identities = 85/101 (84%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 11434 TAGAATTAATAA--AAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| ||| || |||| ||| |||||||||| | | |||||||| ||||||||| Sbjct 137011 TAGAAATAAAAAGAAAAAGGAAAATCTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 137070 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 137071 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 137111 >seq6557 Length=3859 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2411 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 2352 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 2351 CTGAGCTAATAGGCC 2337 >seq4034 Length=21170 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2236 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 2177 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 2176 CTGAGCTAATAGGCC 2162 >seq2025 Length=61441 Score = 105 bits (116), Expect = 3e-18 Identities = 76/86 (88%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| |||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 40654 AAAAA--AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 40711 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 40712 GCTCTAACCAACTGAGCTAATAGGCC 40737 >seq2069 Length=60596 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| |||| |||| | | |||||||| ||||||||||||||||||||||||| Sbjct 4807 AAAAA--AAAATGGCTCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 4864 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 4865 CTCTAACCAACTGAGCTAATAGGCC 4889 >seq878 Length=118911 Score = 104 bits (114), Expect = 1e-17 Identities = 84/101 (83%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 11434 TAGAATTAATAA--AAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| ||| || |||| ||| |||||||||| | | |||||||| ||||||||| Sbjct 2916 TAGAAATAAAAAGAAAAAGGAAAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 2975 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||| |||||||||| |||| Sbjct 2976 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 3016 >seq301 Length=205073 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 172699 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 172758 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 172759 TGAGCTAATAGGCC 172772 >seq30 Length=495629 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 127470 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 127411 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 127410 TGAGCTAATAGGCC 127397 >seq4454 Length=16061 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| | ||||||||||||||||||||||||||| || Sbjct 352 AAAATGGCCCATGCAGGTCTCGAACCTGCAACCTTCGCGTTATTAGCACGACGCTCTAAC 293 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 292 CAACTGAGCTAATAGGCC 275 >seq2470 Length=48308 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| | ||||||||||||||||||||||||||| || Sbjct 3045 AAAATGGCCCATGCAGGTCTCGAACCTGCAACCTTCGCGTTATTAGCACGACGCTCTAAC 3104 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 3105 CAACTGAGCTAATAGGCC 3122 >seq244 Length=223863 Score = 96.9 bits (106), Expect = 2e-15 Identities = 87/107 (81%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 11426 GGGAAATATAGAATTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGA 11482 ||||||| || || ||| || ||| | || ||||||||| | | |||||||| ||| Sbjct 25484 GGGAAAT-TA-AACTAAAAATAAAAGAGATACATGGCCCATGCAGGTTTCGAACCTGCGA 25541 Query 11483 CCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| ||||||||||||||| |||| Sbjct 25542 GCTTCACGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 25588 >seq208 Length=236876 Score = 96.9 bits (106), Expect = 2e-15 Identities = 87/107 (81%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 11426 GGGAAATATAGAATTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGA 11482 ||||||| || || ||| || ||| | || ||||||||| | | |||||||| ||| Sbjct 236217 GGGAAAT-TA-AACTAAAAATAAAAGAGATACATGGCCCATGCAGGTTTCGAACCTGCGA 236274 Query 11483 CCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| ||||||||||||||| |||| Sbjct 236275 GCTTCACGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 236321 >seq700 Length=136544 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||| || ||| |||||||| || | | ||||| || |||||||||||||||||||||| Sbjct 12471 AAAGAAACAAGGATTGGCCCCTGCAGGTCTCGAATCTGCGACCTTCGCGTTATTAGCACG 12412 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| | ||||||||||||| |||| Sbjct 12411 ACGCTCTAATCAACTGAGCTAATAGGCC 12384 >seq175 Length=255582 Score = 91.5 bits (100), Expect = 8e-14 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 11445 AAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | ||||||||||| | | |||||||| ||||||||| |||||||||||||| Sbjct 211319 AAAAATAATTATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGTGTTATTAGCACGAC 211378 Query 11504 GCTCTRACCAACTGAGCTAAT 11524 ||||| || |||| ||||||| Sbjct 211379 GCTCTAACGAACTTAGCTAAT 211399 Lambda K H 0.637 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261454779832528