Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq9 284 2e-71 seq3095 282 5e-71 seq2645 224 1e-53 seq1688 125 9e-24 >seq9 Length=772998 Score = 284 bits (314), Expect = 2e-71 Identities = 344/468 (74%), Gaps = 14/468 (3%) Strand=Plus/Minus Query 135467 TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTT 135526 |||||| | || |||||||| || ||| | |||||||| || || | || ||| || Sbjct 516041 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 135527 GCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAAC 135586 ||||||| || | || ||||| || || ||||||||||| || | || ||| Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 515931 Query 135587 GCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATAT 135646 | || | || || || || || ||||||||| ||||||||||| ||| |||| Sbjct 515930 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 135647 AATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATG 135706 ||||||||||||||| | ||| | || | |||||| | | ||||| | ||| ||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 135707 GGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTAC 135766 ||||| ||||||||||| || | | |||||||||| ||||||||| ||| || | Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 135767 TCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCT 135826 ||||| |||||| | |||||||||||||||||| || | ||||| |||| ||||| | Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 135827 TTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAG 135886 ||| |||||||||||| | || || | ||| ||||| |||| ||| |||| ||| || Sbjct 515695 TTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAG 515636 Query 135887 GCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCT 135934 | ||| |||||||| || |||||||| || |||||||| || || ||| Sbjct 515635 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq3095 Length=35243 Score = 282 bits (312), Expect = 5e-71 Identities = 342/460 (74%), Gaps = 17/460 (4%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||| | ||| | || |||||||| ||||| || || | || ||||| || || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCAC 135491 ||||| ||||| ||| | | | || || |||| |||||| | |||||||||||||| | Sbjct 19858 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 19915 Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551 |||| || |||||||| || || || || |||||| |||||||| || | || ||||| | Sbjct 19916 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 19975 Query 135552 ACATCAT-----CTCTGGTGCTGTTATCCCTTCTAGCAAC----GCCATCGGCCTTCACT 135602 | || || ||||||||| |||| ||| | | | || ||||| | |||| Sbjct 19976 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 20035 Query 135603 TCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATC 135662 | || || ||||||||||| ||| ||||||||||| |||| ||||| ||||||||| Sbjct 20036 TTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 20091 Query 135663 AACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAAC 135722 | ||| | || | |||||| | | ||||| | ||| |||||||| |||||||||| Sbjct 20092 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 20151 Query 135723 TCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCG 135782 | || ||| ||||||||||| ||||||||| ||| || || ||||| |||||||| | Sbjct 20152 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 20211 Query 135783 CTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGG 135822 ||||||||||||||||| || | |||| |||| ||||| Sbjct 20212 CTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGG 20251 >seq2645 Length=47068 Score = 224 bits (248), Expect = 1e-53 Identities = 289/392 (74%), Gaps = 5/392 (1%) Strand=Plus/Minus Query 135365 TGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTT 135424 |||| || |||||| | ||| | || |||||||| || || || || | || |||||| Sbjct 45802 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 45743 Query 135425 GGAACGCTGATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCA 135482 || ||||||| ||||| ||| | | | | || |||| |||||| | || |||| Sbjct 45742 GGGGTTTTGATGATCCCTAC-CTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCA 45685 Query 135483 TCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGT 135542 |||| || ||||| || |||||||| || || || || |||||| ||||||||||| | | Sbjct 45684 TCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTT 45626 Query 135543 ACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACT 135602 | ||||| || || ||||||||||| |||| ||| || | ||||| | || | Sbjct 45625 ATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATT 45566 Query 135603 TCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATC 135662 | || || || ||||||||||| || ||||||| ||| |||| ||||||||||||||| Sbjct 45565 TTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATG 45506 Query 135663 AACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAAC 135722 | ||| | || | || ||| | | ||||| | ||| |||||||| |||||||||| Sbjct 45505 AGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 45446 Query 135723 TCTCTTACCGACTGGGTATGCGCCCTTGGATT 135754 | || ||| ||||||||||| ||||||||| Sbjct 45445 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATT 45414 Score = 221 bits (244), Expect = 2e-52 Identities = 288/392 (73%), Gaps = 5/392 (1%) Strand=Plus/Plus Query 135365 TGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTT 135424 |||| || |||||| | ||| | || |||||||| || || || || | || |||||| Sbjct 1023 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 1082 Query 135425 GGAACGCTGATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCA 135482 || ||||||| ||||| ||| | | | | || |||| |||||| | || |||| Sbjct 1083 GGGGTTTTGATGATCCCTAC-CTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCA 1140 Query 135483 TCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGT 135542 |||| || ||||| || |||||||| || || || || |||||| ||||||||||| | | Sbjct 1141 TCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTT 1199 Query 135543 ACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACT 135602 | ||||| || || |||||||||| |||| ||| || | ||||| | || | Sbjct 1200 ATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATT 1259 Query 135603 TCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATC 135662 | || || || ||||||||||| || ||||||| ||| |||| ||||||||||||||| Sbjct 1260 TTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATG 1319 Query 135663 AACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAAC 135722 | ||| | || | || ||| | | ||||| | ||| |||||||| |||||||||| Sbjct 1320 AGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 1379 Query 135723 TCTCTTACCGACTGGGTATGCGCCCTTGGATT 135754 | || ||| ||||||||||| ||||||||| Sbjct 1380 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATT 1411 >seq1688 Length=72660 Score = 125 bits (138), Expect = 9e-24 Identities = 124/160 (78%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 136080 ATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTAC 136139 ||||||| || ||||| | |||||||||||||| ||||||||||||||||| ||| Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 136140 ACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTA 136199 |||| || |||||||||||||| | || |||||||| |||| | || | || Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 136200 CGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTC 136239 | ||||| |||||||| ||||| ||||| |||||||| || Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATC 24717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627878294771200