Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq9 242 1e-59 seq3095 203 9e-48 seq2645 176 1e-39 seq748 143 8e-30 seq1688 107 6e-19 >seq9 Length=772998 Score = 242 bits (268), Expect = 1e-59 Identities = 337/469 (72%), Gaps = 16/469 (3%) Strand=Plus/Minus Query 19383 TTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 19442 ||||| ||||||| |||||||| | | ||||||| ||||| || | |||||| || Sbjct 516041 TTTATTATCGCCTTCATCGCAGCTTC--CAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 19443 TCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAAT 19502 | || || ||| | || |||||||||||||| ||||| || | |||||| ||| Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAA-CTC---- 515929 Query 19503 GCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATAC 19562 || |||| ||||| || || |||||| | || | ||||| ||||||||| Sbjct 515928 -------GATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 19563 AACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCT 19622 || || ||||| ||| | || |||| | ||||||||| | || ||||| || Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 19623 GGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATAT 19682 ||| | |||||||||| || | | | || ||| || ||||| || ||| || Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 19683 ACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAG 19741 |||| || | ||||| ||| |||||| ||||| | ||||||| |||| ||||| || Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGT-TTTCTTGATTTACCCTATTGGTCAAGGAAG 515697 Query 19742 TTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCA 19801 ||| ||||||||||||| | || |||| ||||||||| ||||||||| | |||||| | Sbjct 515696 TTTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGA 515637 Query 19802 AGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCT 19850 | ||| ||||| |||||||||||||| || |||||| | ||||| ||| Sbjct 515636 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq3095 Length=35243 Score = 203 bits (224), Expect = 9e-48 Identities = 327/467 (70%), Gaps = 15/467 (3%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || ||||| ||||| ||||| | || ||||| || || | ||||| ||| Sbjct 19807 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 19866 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | || ||| || ||||| |||| || ||||| || || || |||||| Sbjct 19867 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGAT 19926 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA-----ATATTA 19473 || ||||| || |||||||| ||||| || || ||| | || ||||||| |||||| Sbjct 19927 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTA 19986 Query 19474 TTTCTGGAGCAGTAGTTCCAAGC----TCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 | ||||| || | |||| | | || || || ||| |||||||||| | | Sbjct 19987 TCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC----C 20042 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | || | ||||||||||||||||| |||||||| ||| | || |||| Sbjct 20043 TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 20102 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||||||| | || ||||| || ||| | |||||||||| || | | Sbjct 20103 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 20162 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| | || ||||| || |||||| |||| || | |||| ||| |||| Sbjct 20163 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 20222 Query 19710 GTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTA 19755 || ||||| | || |||| |||| ||||| |||||| ||||| || Sbjct 20223 GT-TTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 >seq2645 Length=47068 Score = 176 bits (194), Expect = 1e-39 Identities = 228/314 (73%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || |||||||| || ||||| | || |||||||| || | ||||| ||| Sbjct 45784 TGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCT 45725 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | | ||| || ||||| ||||||| |||||||| || || |||||| Sbjct 45724 ACCTTATTGACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGAT 45666 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| ||||| || || || | || |||||||||||||| ||| Sbjct 45665 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTCT 45606 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | || | || ||| |||| ||||| || || |||||||| Sbjct 45605 GGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCT 45546 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | | || ||||| ||||||||||| || ||||| ||| | || |||| | || ||| Sbjct 45545 GCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC 45486 Query 19599 TTAATAGGAGTAGC 19612 ||| | || ||||| Sbjct 45485 TTACTTGGTGTAGC 45472 Score = 170 bits (188), Expect = 6e-38 Identities = 227/314 (72%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || |||||||| || ||||| | || |||||||| || | ||||| ||| Sbjct 1041 TGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCT 1100 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | | ||| || ||||| ||||||| |||||||| || || |||||| Sbjct 1101 ACCTTATTGACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGAT 1159 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| ||||| || || || | || |||||||||||| | ||| Sbjct 1160 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTTTCTCT 1219 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | || | || ||| |||| ||||| || || |||||||| Sbjct 1220 GGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCT 1279 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | | || ||||| ||||||||||| || ||||| ||| | || |||| | || ||| Sbjct 1280 GCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC 1339 Query 19599 TTAATAGGAGTAGC 19612 ||| | || ||||| Sbjct 1340 TTACTTGGTGTAGC 1353 >seq748 Length=127770 Score = 143 bits (158), Expect = 8e-30 Identities = 131/164 (80%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 19722 TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTT 19781 ||||| ||| ||||| |||||| | |||||||| || | || |||||||||||||| Sbjct 126730 TACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTC 126671 Query 19782 AACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTC 19841 ||||||||| | |||||||| ||| | ||||| ||||||| |||||| || ||||| | Sbjct 126670 AACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTA 126611 Query 19842 GGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 19885 ||||| ||||| |||||||| || || || ||| ||||||||| Sbjct 126610 GGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCA 126568 >seq1688 Length=72660 Score = 107 bits (118), Expect = 6e-19 Identities = 125/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 19998 GGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACAT 20057 || || ||||| |||| || || ||||||||| |||||| || |||||||||||||| Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 20058 TTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACT 20117 |||| | ||| ||| || || | || || ||| | || | | || || | ||| Sbjct 24811 TTCT---TGGCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 20118 ATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT 20165 ||||| |||||||| |||||||| || || ||||| || ||||||||| Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 24707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144421998191568