Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq9 219 7e-52 seq3095 183 5e-41 seq2645 150 3e-31 seq1688 107 3e-18 >seq9 Length=772998 Score = 219 bits (242), Expect = 7e-52 Identities = 328/467 (70%), Gaps = 14/467 (3%) Strand=Plus/Minus Query 211663 TTTATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTA 211722 ||||| | || ||||||||||| ||| | ||||| || || || | ||| || | Sbjct 516041 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 211723 GCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAAC 211782 |||||| || | ||||| ||||| || ||||||||||| || ||||| || | Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACTCGA--- 515927 Query 211783 GCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTAC 211842 || || || || || || |||||| ||| |||||||||| ||| | ||| Sbjct 515926 ---------TTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 211843 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATG 211902 |||||||||||||| || | | | | |||||| | | || | | || ||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 211903 GGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTAT 211962 || | ||||||||||| | | || | ||||||| ||||||||| |||||| || Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 211963 TCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCA 212022 ||||| ||||| ||||| ||| ||||| ||| | ||||||| | ||||| || Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 ||||| || |||||||||||||| || | || || |||||||| ||| | |||||| | Sbjct 515695 TTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAG 515636 Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGC 212129 | ||| || |||||||||||||| ||||| || ||| |||||| || Sbjct 515635 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 183 bits (202), Expect = 5e-41 Identities = 320/460 (70%), Gaps = 17/460 (4%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 |||||| ||||| |||| | || | || ||| | | || | || ||||| |||||| | Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 19856 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || |||||||| || | Sbjct 19857 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCC 19915 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || ||||| || || ||||||| || | ||||| |||| Sbjct 19916 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 19975 Query 211748 ACATCAT-----CTCTGGTGCAGTTGTTCCATC----TTCAAACGCAATCGGTTTACACT 211798 | || || ||||||||| || |||| | ||| || ||||| || |||| Sbjct 19976 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 20035 Query 211799 TCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACC 211858 | || ||| ||||||| ||| || ||||||||||| | |||||||| |||||||| Sbjct 20036 TTTACCCT----GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 20091 Query 211859 AGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAAC 211918 || | | | | |||||| | | || | | || ||||| | ||||||||| Sbjct 20092 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 20151 Query 211919 TTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAG 211978 || | |||| | ||||||||||||||||| |||||| |||||||| ||||| ||| Sbjct 20152 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 20211 Query 211979 CAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGG 212018 | ||| ||||| ||| | || |||| | ||||| || Sbjct 20212 CTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGG 20251 >seq2645 Length=47068 Score = 150 bits (166), Expect = 3e-31 Identities = 239/339 (71%), Gaps = 3/339 (1%) Strand=Plus/Minus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGT 211670 || |||||||| ||| | |||||||| | ||| | | | |||| | ||||| | Sbjct 45751 GGATGGTTTGGGGTTTTGATGATCCC-TACCTTATTGACCACAACTTCTGTATTTATTAT 45693 Query 211671 AGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTC 211730 || ||||||||||| ||||| || ||||| || || || ||||| || || ||||||| Sbjct 45692 CGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 45634 Query 211731 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 211790 | | ||||| ||||| || ||||||||||| || |||| |||| | ||||| Sbjct 45633 TCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGG 45574 Query 211791 TTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGG 211850 || || || || || || |||||||| ||| | ||||||| ||| | ||||||||||| Sbjct 45573 ATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGG 45514 Query 211851 TCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACA 211910 |||||| || | | | | || ||| | | || | | || ||||| | | Sbjct 45513 TCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 45454 Query 211911 GTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGAT 211949 |||||||||| | |||| | ||||||||||||||||| Sbjct 45453 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 145 bits (160), Expect = 1e-29 Identities = 238/339 (70%), Gaps = 3/339 (1%) Strand=Plus/Plus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGT 211670 || |||||||| ||| | |||||||| | ||| | | | |||| | ||||| | Sbjct 1074 GGATGGTTTGGGGTTTTGATGATCCC-TACCTTATTGACCACAACTTCTGTATTTATTAT 1132 Query 211671 AGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTC 211730 || ||||||||||| ||||| || ||||| || || || ||||| || || ||||||| Sbjct 1133 CGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 1191 Query 211731 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 211790 | | ||||| ||||| || |||||||||| || |||| |||| | ||||| Sbjct 1192 TCTACTTTATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGG 1251 Query 211791 TTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGG 211850 || || || || || || |||||||| ||| | ||||||| ||| | ||||||||||| Sbjct 1252 ATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGG 1311 Query 211851 TCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACA 211910 |||||| || | | | | || ||| | | || | | || ||||| | | Sbjct 1312 TCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 1371 Query 211911 GTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGAT 211949 |||||||||| | |||| | ||||||||||||||||| Sbjct 1372 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 107 bits (118), Expect = 3e-18 Identities = 126/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 212276 ATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTAC 212335 |||| || || ||| || | |||||||| ||||| ||||||||| | ||||| Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 212336 ACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCA 212395 ||||||| || | |||||||| || | | ||||| || || | ||||| | | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 212396 CAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 | |||||||||||||||||||| ||||| ||||||||||| || |||||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 24707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807439840739680