Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq9 183 3e-41 seq3095 154 2e-32 seq2645 138 1e-27 seq1688 129 7e-25 >seq9 Length=772998 Score = 183 bits (202), Expect = 3e-41 Identities = 320/467 (69%), Gaps = 14/467 (3%) Strand=Plus/Minus Query 170759 TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTT 170818 || ||| | || |||||||| ||| |||| | ||||| || || || || || || Sbjct 516041 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 170819 GCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAAC 170878 |||||||| | ||||| ||||| || ||||||||||| | ||||| || Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACTC----- 515929 Query 170879 GCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTAC 170938 |||| || || || || || |||||| || || | || || ||||| ||| Sbjct 515928 -------GATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 170939 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 170998 || || |||||||| || || || || | |||||| | |||| | || || ||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 170999 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 171058 ||| | |||||||||| | | | || || ||| |||||||| ||| ||| | Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 171059 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 171118 ||||| ||||| || || || ||| || ||| | | || || | ||||| || Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 ||||||||||||||||| |||| |||| ||||| |||||||| ||| | || ||| | Sbjct 515695 TTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAG 515636 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGC 171225 | ||| |||||||| || ||||| || || || ||| ||||||||| Sbjct 515635 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 154 bits (170), Expect = 2e-32 Identities = 285/414 (69%), Gaps = 18/414 (4%) Strand=Plus/Plus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| ||| || || || | ||| | || ||||| ||||| || |||||||| Sbjct 19807 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 19865 Query 170735 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 170793 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 19866 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGA 19925 Query 170794 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACA-----ACATC 170848 ||| || || || | || || ||| | |||||||| | ||||| |||| | || Sbjct 19926 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATT 19985 Query 170849 ATCTCTGGTGCTGTAGTT----CCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 ||||||||||| | || || |||| || || ||||| ||||| || | Sbjct 19986 ATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC---- 20041 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 ||||||||| || || | || |||||||| ||||| || |||||||| || || || | Sbjct 20042 CTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 20101 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | | |||||| | |||| | || || |||||| | |||||||||| | | | Sbjct 20102 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 20161 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGC 171078 || || ||| | |||||||| ||| ||||| ||||| ||||| |||||| Sbjct 20162 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGT---TGCAGC 20212 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | || || |||||| || || |||||||| || || |||||||| || Sbjct 21346 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 21287 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGT----AGGAACTAC 171910 || || || || ||||||||||| | || | || |||||||| || ||| ||||| Sbjct 21286 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTAC 21227 Query 171911 TTTCGTGACCTCATGGTACACACATGGTATTG 171942 ||| || || || ||||| || ||||| |||| Sbjct 21226 TTTTGTAACTTCTTGGTATACCCATGG-ATTG 21196 >seq2645 Length=47068 Score = 138 bits (152), Expect = 1e-27 Identities = 256/372 (69%), Gaps = 3/372 (1%) Strand=Plus/Minus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| ||| || ||||| | ||| | || |||||||| || || |||||||| Sbjct 45784 TGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCC- 45726 Query 170735 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 170793 | ||| | || | || || || ||| | || |||||||| || |||||||| || Sbjct 45725 TACCTTATTGACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGA 45667 Query 170794 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 170853 ||| || || || | || || ||| | |||||| | | ||||| ||||| || ||||| Sbjct 45666 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTC 45607 Query 170854 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 170913 |||||| | |||| |||| | || ||||| || || || || || |||||||| Sbjct 45606 TGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGC 45547 Query 170914 AGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 170973 || | | || || ||||| ||||| || |||||||| || || || || | || || Sbjct 45546 TGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTT 45487 Query 170974 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 171033 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 45486 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 45427 Query 171034 GAGACCTTGGAT 171045 | | |||||||| Sbjct 45426 GCGTCCTTGGAT 45415 >seq1688 Length=72660 Score = 129 bits (142), Expect = 7e-25 Identities = 131/170 (77%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 171372 ATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTAC 171431 |||| || || ||| ||||||||||||| ||||| ||||||||||||||||| |||| Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 171432 ACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTA 171491 |||||| | |||| | |||||| | | | ||||| || || | ||||| ||| Sbjct 24813 ACTTCT---TGGCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 171492 CAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 171541 | |||||||||||||| || || ||||| ||||||||||| || || ||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 24707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570187337101920