Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq219 91.5 4e-13 seq143 86.0 2e-11 seq1871 84.2 6e-11 >seq219 Length=232383 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 371111 AATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGTGACCGTCCTTC 371170 ||| || ||||| ||||||| ||||| | |||||||||||||| ||||| || ||||| Sbjct 100492 AATCATACAATCCCTCTCCATTTCACCGAAACGGAGACCACCATCACGTGAACGCCCTTC 100551 Query 371171 TGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGGTTGCGTGCATGTGACTTGTCAAC 371230 || ||| || || |||| ||| | ||| || | || |||| ||| ||| | Sbjct 100552 TGCTGGTTGTCGGGTGAGTATCTGGACAGGACCACGACCTCTTGAATGTATCTTATCATC 100611 Query 371231 TACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAATCATAG 371280 |||||||||||||| | || ||||| ||| | | |||||||||| Sbjct 100612 CACCATGTGCTTGAGTCTTTGGTAATATGTGGGACCCAAGAAAATCATAG 100661 >seq143 Length=284017 Score = 86.0 bits (94), Expect = 2e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||||||||| | ||||| | | || |||||||||||||| || ||||||||||| Sbjct 35178 CAGTTTTATGTTGAGAACGGGGAGTTATCCTGCCAAATGTATCAACGTTCTGCTGATATG 35237 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCA 111788 |||||||| ||||| || || |||||| Sbjct 35238 GGTCTTGGAGTTCCATTCAACATTGCA 35264 >seq1871 Length=66875 Score = 84.2 bits (92), Expect = 6e-11 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || || ||| | |||||| | || | Sbjct 39729 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTCTGAAGGAATGTGCTGTCATAAGC 39670 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || ||||||||||| || | |||||| |||| || || | ||||| || Sbjct 39669 AAATCTGCTGGAGGAATTGGTGTTTCAGTTCACAATATTCGAGCTACTG-GTAGTTATAT 39611 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || || ||| | ||||| ||| | ||||| || | |||| Sbjct 39610 TCGGGGAACAAATGGAACTTCCAACGGGATTGTTCCTATGTTACGTGTTTTCAATGATAC 39551 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || ||||| || || | |||||| Sbjct 39550 TGCTCGTTATGTTGATCAAGGTGGCGGCAAAAG-AAAGGG 39512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303162761336696