Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5477 136 3e-27 seq5212 136 3e-27 seq30 122 6e-23 seq1689 105 4e-18 >seq5477 Length=8221 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 651 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 710 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 711 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 745 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 3060 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGC 3119 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||| |||| Sbjct 3120 TGTAATATTTAGTCTTA 3136 >seq5212 Length=9800 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||| |||||||||||| || |||||||| Sbjct 799 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGGTAGTAGATAGGGACAGTGGGAATCTCGT 858 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 859 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 893 Score = 87.8 bits (96), Expect = 1e-12 Identities = 56/60 (93%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCT-TTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| ||| Sbjct 3529 CTCTCTCTGCAAAGTTCTATTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTGTCG 3588 >seq30 Length=495629 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 144592 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 144533 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||||||||||||||||||||||||| Sbjct 144532 TAATCTATTCATGCGCGTCACTAATTAGATGACGA 144498 >seq1689 Length=72926 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | |||| || | |||||||| |||||| || ||||||||||||| | Sbjct 2108 CCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCC 2167 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | ||| || || ||||| || || || || || || | ||| Sbjct 2168 AATGTGCGCCCATCCTCGAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTGGTGGG 2227 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || ||| ||||||||| | || || ||| || ||||| Sbjct 2228 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTGAGCTCTCAACC 2287 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | |||||||| || || || | || ||||| || ||||||||| Sbjct 2288 TCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCATG 2335 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | ||| | || | ||||| || |||||| || || ||||| || | | Sbjct 2336 CCACCCCTAAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 2395 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || ||||| || || || || | || || || | |||| Sbjct 2396 AGTGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 2455 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| ||||||||| ||| ||| ||| ||||| | | ||| || || ||||| Sbjct 2456 ATGCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACC 2515 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || || || || | ||| ||||| ||||||||||| Sbjct 2516 TCCAATGTTATTGTCTTTCCTGTAAGGGTCTTCACAAATATCTGCAT 2562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334900548972668