Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq927 104 2e-17 seq1689 98.7 9e-16 seq2252 87.8 2e-12 seq421 84.2 2e-11 >seq927 Length=112269 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| | || |||||||| ||| Sbjct 58224 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 58283 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || ||||| Sbjct 58284 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 58343 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| ||||||||||| || | || |||| ||||| | | |||||||| Sbjct 58344 CAGAGGCTTATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACACTTGCTGATTACAAC 58403 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 58404 ATACAGAAGGAGTCTACCCTCCACCTGGTGCT 58435 >seq1689 Length=72926 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || | || || | || || ||| || Sbjct 2334 ATGCAGATCTTTGTGAAGACTCTCACTGGAAAGACTATTACTCTTGAGGTTGAGAGCTCA 2275 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| ||| ||| ||||| || || || ||||| ||||| Sbjct 2274 GACACAATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAG 2215 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || ||| | || |||| ||||| ||| ||||||||| Sbjct 2214 CAGCGACTCATCTTTGCTGGGAAGCAACTCGAGGATGGGCGCACATTGGCTGATTACAAT 2155 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || | || || | || |||||||| Sbjct 2154 ATCCAGAAGGAGTCTACTCTTCACCTTGTCCTGCGCCTCAGAGGAGG 2108 >seq2252 Length=53314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || || ||||| || ||||| || || | |||||||| || || ||||| ||| Sbjct 37878 GACAAGGAGGGCATTCCCCCAGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 37819 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | || | | ||||| || ||||||||||| || || || || || || || Sbjct 37818 GATGGAAGAACATTAGCTGATTATAACATTCAAAAAGAGTCGACACTTCACTTGGTCCTG 37759 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| ||||| |||| Sbjct 37758 AGGCTCAGAGGTGGAA 37743 >seq421 Length=177167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || ||||||||||| || || || ||||| | || ||||| ||||| || | || Sbjct 159350 GATAAGGAAGGGATTCCTCCGGATCAGCAGCGTTTGATATTTGCTGGCAAGCAGCTGGAG 159409 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||||| ||| || ||||| ||||| || || || || ||||| || || || Sbjct 159410 GATGGACGCACGCTGGCTGACTACAACATTCAGAAGGAGTCGACTCTACACTTGGTACTC 159469 Query 25212 AGGCTAAGAGGAGG 25225 ||||| ||||| || Sbjct 159470 AGGCTCAGAGGTGG 159483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433267646617820