Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq9 208 9e-49 seq3095 190 2e-43 seq2645 170 2e-37 seq1688 152 6e-32 seq748 98.7 1e-15 >seq9 Length=772998 Score = 208 bits (230), Expect = 9e-49 Identities = 306/434 (71%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 166180 GATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATC 166239 ||||| ||||| || | |||||| | || ||| || | ||||| ||||| || ||| Sbjct 516010 GATATTGATGGTATTCATGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATC 515951 Query 166240 TCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAA 166299 |||||||| || | |||||| | |||| || || || || || |||| Sbjct 515950 TCTGGTGCCATTTT-------TCCAACTCGATTG-----CATTTTTACCCAATTCAGGAA 515903 Query 166300 GCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCAC 166359 || ||||| |||||||||||| | || || |||||||||| |||| | || | ||| Sbjct 515902 GCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAC 515843 Query 166360 TTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGT 166419 ||| | | || | | || ||||||||||| |||||| | || | | || ||| Sbjct 515842 TTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGT 515783 Query 166420 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTC 166479 |||| |||||||||| || ||| | || || |||||| |||| || | || || ||| Sbjct 515782 ATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTC 515723 Query 166480 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGC 166539 || | || ||| | |||||||| ||||||||| | ||||| | || ||| ||| Sbjct 515722 TTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTTTGGT 515663 Query 166540 ACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCAT 166599 || ||||||| ||| |||| ||| | | ||||||||||||||| ||||| || || || Sbjct 515662 ACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCAC 515603 Query 166600 ATGCTGGGTGTAGC 166613 ||| | |||||||| Sbjct 515602 ATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 190 bits (210), Expect = 2e-43 Identities = 329/475 (69%), Gaps = 15/475 (3%) Strand=Plus/Plus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||| | ||| | || ||| | ||||||||||| | || ||||| || | Sbjct 19797 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 19856 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || || | ||| | ||||| ||||| || || |||||||| | || || | Sbjct 19857 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 19915 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 |||| || ||||| ||||| || |||||||| || | || ||| || | ||||| |||| Sbjct 19916 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 19975 Query 166232 ACATCAT-----CTCTGGTGCTGTTGTCCCCTCCTCCAAC----GCAATTGGTCTTCACT 166282 | || || ||||||||| || | || ||| | | || || || | |||| Sbjct 19976 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 20035 Query 166283 TCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCC 166342 | || || |||||||| ||||| ||||||| ||| | || || || ||||||| Sbjct 20036 TTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 20091 Query 166343 AGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAAT 166402 |||| | || | |||||| | | || | | || ||||||||||| |||||| Sbjct 20092 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 20151 Query 166403 TGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAG 166462 | || ||| || |||||||||||||||||| || ||||| || || |||||||||| Sbjct 20152 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 20211 Query 166463 CAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGC 166517 | || | || || ||| || | | ||| | |||||||| ||| ||||| || Sbjct 20212 CTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGC 20266 >seq2645 Length=47068 Score = 170 bits (188), Expect = 2e-37 Identities = 270/383 (70%), Gaps = 3/383 (1%) Strand=Plus/Minus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||| | ||| | || ||| | || |||||||| | || |||||||| | Sbjct 45794 CTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTT 45735 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || || | ||| | |||| ||||| || || |||| ||| | || || | Sbjct 45734 GATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-C 45677 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 |||| || ||||| ||||| || |||||||| || | || |||||| | ||||| |||| Sbjct 45676 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACA 45617 Query 166232 ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCA 166291 | || ||||||||||| || | || | || | || || | || || || || | Sbjct 45616 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAA 45557 Query 166292 TCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAG 166351 | |||||||| |||||| ||||||||||| | || || |||||||||| |||| | | Sbjct 45556 TTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 45497 Query 166352 TCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACC 166411 | | || ||| | | || | | || ||||||||||| |||||| | || || Sbjct 45496 TTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 45437 Query 166412 GCCTCGGTATGCGTCCTTGGATT 166434 | || |||||||||||||||||| Sbjct 45436 GTCTGGGTATGCGTCCTTGGATT 45414 Score = 167 bits (184), Expect = 3e-36 Identities = 269/383 (70%), Gaps = 3/383 (1%) Strand=Plus/Plus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||| | ||| | || ||| | || |||||||| | || |||||||| | Sbjct 1031 CTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTT 1090 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || || | ||| | |||| ||||| || || |||| ||| | || || | Sbjct 1091 GATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-C 1148 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 |||| || ||||| ||||| || |||||||| || | || |||||| | ||||| |||| Sbjct 1149 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACA 1208 Query 166232 ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCA 166291 | || |||||||||| || | || | || | || || | || || || || | Sbjct 1209 ATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAA 1268 Query 166292 TCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAG 166351 | |||||||| |||||| ||||||||||| | || || |||||||||| |||| | | Sbjct 1269 TTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 1328 Query 166352 TCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACC 166411 | | || ||| | | || | | || ||||||||||| |||||| | || || Sbjct 1329 TTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1388 Query 166412 GCCTCGGTATGCGTCCTTGGATT 166434 | || |||||||||||||||||| Sbjct 1389 GTCTGGGTATGCGTCCTTGGATT 1411 >seq1688 Length=72660 Score = 152 bits (168), Expect = 6e-32 Identities = 162/213 (76%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 166760 ATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGC 166819 ||||||| || ||||| | ||||||||||| ||| |||||||||||||| || | | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 166820 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCA 166879 ||||||| || || |||||||| | || |||||||| |||||| | ||| |||| | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 166880 CCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTC 166939 | |||||||||||||| || |||||||| |||||||| || | | ||| | || |||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 166940 GTGTGCTCAACACTTGGGCAGATGTCCTCAACC 166972 | | | || |||||||| ||| | |||||| Sbjct 24696 GCCTTATGAATACTTGGGCTGATACCATCAACC 24664 >seq748 Length=127770 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/208 (72%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 166495 GGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATG 166554 |||||||| ||| ||| | | ||| | | || ||| ||| || ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 166555 CTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCA 166614 |||| ||||| ||| ||||||||||||| | ||| || || || || | |||||||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 166615 GGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTC 166674 ||||||||||| || || || ||| || ||||| | | || || | || | | Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCT-CTAGTTT 126544 Query 166675 G-TCCGTGAGACCACTGAAACTGAGTCT 166701 | || | ||||||||||||||||| ||| Sbjct 126543 GCTCAGGGAGACCACTGAAACTGAATCT 126516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567150970908800