Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq338 93.3 5e-14 seq3597 89.7 6e-13 seq2033 89.7 6e-13 seq1543 87.8 2e-12 seq911 87.8 2e-12 seq194 87.8 2e-12 seq438 86.0 7e-12 seq127 86.0 7e-12 seq158 84.2 2e-11 seq661 82.4 8e-11 seq140 82.4 8e-11 >seq338 Length=193232 Score = 93.3 bits (102), Expect = 5e-14 Identities = 88/110 (80%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 53344 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 53403 Query 126323 GTGGGTTCGAACCCCACACCTGA---CAAATTATTATTGGAATTTTTGTT 126369 |||||||| || ||||| |||| |||||| ||||| |||||| || Sbjct 53404 GTGGGTTCAAATCCCACTTCTGACATCAAATTTTTATT--TATTTTTATT 53451 >seq3597 Length=27380 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 20617 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 20676 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || ||||| |||||||| Sbjct 20677 TGGGTTCAAATCCCACTTCTGACAAA 20702 >seq2033 Length=66735 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 47359 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 47418 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || ||||| |||||||| Sbjct 47419 TGGGTTCAAATCCCACTTCTGACAAA 47444 >seq1543 Length=79885 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 || |||||| |||| |||||||||||||||||||| | ||| |||||| | || || | Sbjct 38910 ACGGTCAGGATGGCGGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 38851 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| ||||||| || || || Sbjct 38850 GCGTGGGTTCAAATCCCACTTCTGACAATTTGTTTTT 38814 >seq911 Length=115901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 18539 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 18480 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 18479 GTGGGTTCAAATCCCACTTCTGACA 18455 >seq194 Length=240668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 ||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 19040 GTCAGTATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 19099 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||| || ||||| ||||||||| Sbjct 19100 TGGGTTCAAATCCCACTTCTGACAAAT 19126 >seq438 Length=171191 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 32864 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 32921 Query 126328 TTCGAACCCCACACCTGACA-AATTATTATT 126357 ||| || |||||| ||| || |||| ||||| Sbjct 32922 TTCAAATCCCACAGCTGTCATAATTTTTATT 32952 >seq127 Length=294520 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 165295 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 165354 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 165355 TGGGTTCAAATCCCACTTCTGACA 165378 >seq158 Length=268900 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 200741 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 200798 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 200799 GGGTTCAAATCCCACAGCTGTCAATTTTTT 200828 >seq661 Length=138469 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 105052 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 105109 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || | |||| Sbjct 105110 TTCAAATCCCACAGCTGTCATAATATT 105136 >seq140 Length=281607 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/103 (79%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 90296 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 90239 Query 126328 TTCGAACCCCACACCTGAC---AAATTATTATTGGAATTTTTG 126367 ||| || |||||| ||| | || || ||||| ||||||| Sbjct 90238 TTCAAATCCCACAGCTGTCACTAATTTTTTATTTTTATTTTTG 90196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556781252434720