Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq238 105 6e-18 seq1785 104 2e-17 seq1689 95.1 1e-14 seq927 89.7 4e-13 seq84 86.0 5e-12 >seq238 Length=227787 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | || ||| ||| ||||| || || ||| Sbjct 51323 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGACCATCCTCAAGCTGCTTGCCA 51382 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 51383 GCAAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 51442 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || |||| || | || |||||||| || || Sbjct 51443 ACGTTGTCAATGGTGTCAGATGACTCAACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTC 51502 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||||||||||||| Sbjct 51503 TTGACAAAAATCTGCATG 51520 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | || ||| ||| ||||| || || ||| Sbjct 50055 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGACCATCCTCAAGCTGCTTGCCA 50114 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 50115 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 50174 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || |||| ||| | || ||||| || || || Sbjct 50175 ACGTTGTCAATGGTGTCCGAAGACTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGGGTC 50234 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 50235 TTCACAAAGATCTGCAT 50251 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| || Sbjct 50250 ATACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 50309 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| || || || || ||||| |||| |||||||| ||||| || Sbjct 50310 GCGAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGC 50369 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| |||||| || | | |||| ||||| | || || Sbjct 50370 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCAATCGTGTCAGATGACTCA 50429 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | || |||||||| ||||| || ||||||||||||||| Sbjct 50430 ACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAAATCTGCATG 50480 >seq1785 Length=68507 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||| || || || || ||| || || || |||||| Sbjct 65312 GTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTACCA 65253 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || |||||||| ||||||||||| ||||| || ||||| |||||| || Sbjct 65252 GCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTC 65193 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || || | ||| | || ||||| || || || Sbjct 65192 ACGTTATCAATGGTGTCCGAAGACTCCACCTCTAAGGTGATGGTCTTGCCAGTAAGCGTC 65133 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 65132 TTCACAAAGATCTGCAT 65116 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| || Sbjct 65117 ATACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 65058 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| ||||| ||||| |||||| ||||||||||||| ||||| ||| Sbjct 65057 GCAAGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGA 64998 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | || | |||||| | ||| || Sbjct 64997 GGAATACCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTGTCCGAGGACTCC 64938 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| || || || || ||||| ||||||||| Sbjct 64937 ACCTCAAGCGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 64887 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || ||||| || ||||| ||||||||||||| || ||||| || ||||| || ||| Sbjct 64586 TCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTG 64527 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | |||| |||||| | ||| || || || | ||| | Sbjct 64526 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATG 64467 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||||||| || || || || || |||||||| Sbjct 64466 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 64432 >seq1689 Length=72926 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || ||||| ||| ||||| || || || Sbjct 1910 GTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGCCCATCCTCAAGCTGCTTCCCG 1969 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||| ||||| ||||| ||||| || Sbjct 1970 GCAAAGATAAGCCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTC 2029 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || || | || | ||| ||||| |||||||| Sbjct 2030 ACATTATCAATGGTGTCCGAGCTCTCCACCTCTAGCGTGATCGTCTTGCCAGTCAGAGTC 2089 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2090 TTGACAAAGATCTGCAT 2106 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || || || || ||| ||||| || || ||| Sbjct 2594 GTAGACTCCTTCTGGATGTTGTAGTCCGCCAGTGTGCGGCCATCCTCAAGCTGCTTCCCA 2653 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || ||||| || ||||| |||||| || Sbjct 2654 GCAAAGATAAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 2713 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | ||| || |||| || | || ||||| || || || Sbjct 2714 ACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAACGTGATTGTCTTGCCAGTAAGGGTC 2773 Query 114366 TTTACAAAAATCTGCAT 114382 ||||||||||| ||||| Sbjct 2774 TTTACAAAAATTTGCAT 2790 >seq927 Length=112269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | ||||| || || || || || ||| Sbjct 57964 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGCTTGCCA 57905 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 57904 GCGAAGATGAGACGCTGCTGGTCCGGGGGTATGCCCTCCTTGTCCTGGATCTTGGCCTTG 57845 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || || || || | ||| | || ||||| || || || Sbjct 57844 ACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 57785 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 57784 TTGACAAAGATCTGCAT 57768 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || ||||||||||| | || || ||| ||||| || || || Sbjct 58420 GTAGACTCCTTCTGTATGTTGTAATCAGCAAGTGTGCGCCCATCCTCAAGCTGCTTGCCG 58361 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||||||||| ||||| || ||||| ||||| || Sbjct 58360 GCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 58301 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || || | ||| | || |||||||| || || Sbjct 58300 ACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 58241 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 58240 TTGACAAAGATCTGCAT 58224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || | ||| || ||| || || || || || Sbjct 58648 GTGGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTGCGGCCATCCTCCAGCTGCTTCCCT 58589 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| |||||||| || || ||||| ||||| ||||| || Sbjct 58588 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATCTTGGCCTTC 58529 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | || || |||| || | || ||||| |||| || Sbjct 58528 ACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAGTGTGATGGTCTTGCCAGTCAAGGTC 58469 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 58468 TTCACAAAGATCTGCATG 58451 >seq84 Length=349560 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | || || ||| || || || || ||| Sbjct 21041 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGCCCATCCTCGAGCTGCTTGCCA 20982 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 20981 GCGAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 20922 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | ||| || || || | ||| | || ||||| || || || Sbjct 20921 ACGTTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 20862 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 20861 TTCACGAAGATCTGCAT 20845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420075884205936